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Abstract Bedform evolution and preserved cross strata are known to respond to floods. However, it is unclear if autogenic dynamics mask the flood signal in bedform evolution and cross strata. To address this, we characterize the temporal structure of autogenic noise in steady‐state bedform evolution in a physical experiment. Results reveal the existence of bedform groups—quasi‐stable collections of bedforms—that migrate at a similar speed as bedforms. We find that bedform and bedform‐group turnover timescales are the key autogenic timescales of bed evolution that set the transition time‐periods between different noise regimes in bedform evolution. Results suggest that bedform‐group turnover timescale sets the lower limit for detecting flood signals in bedform evolution, and floods with duration shorter than bedform turnover timescale can be severely degraded in bedform evolution and cross strata. Our work provides a new framework for interrogating fluvial cross strata for reconstruction of past floods.