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ABSTRACT Here, we report on the raw and coassembled metatranscriptomes of 39 Lake Erie surface (1.0 m) water samples collected over a 2-day diel period encompassing episodic weather and bloom events. Preliminary taxonomic annotations and read mappings revealed thatMicrocystisspp. accounted for up to ~47% of the transcriptionally active community. 

ABSTRACT We report 40 metagenomic libraries collected from the Winam Gulf of Lake Victoria during May–July of 2022–2023 and an additional eight opportunistic libraries from adjacent Lakes Simbi, Naivasha, and regional river systems. The sampling period captured cyanobacterial bloom events – shedding insight onto community composition and genomic potential. 

Abstract Algae, an important foundation of aquatic ecosystems, can become a nuisance or harmful when it grows in excess. Many government agencies have a role in monitoring, responding to, and confirming a harmful algal bloom (HAB). HAB scientists have important information to share, however, given the complexities of HABs, which often involve decoupled drivers from observed impacts, presents challenges to outreach and engagement. Understanding key audience information needs can help scientists prioritize key science communication and engagement opportunities to maximize the impact of such efforts. Scientists may need additional science communication training or support for scientist‐community partnerships. This will be evermore important into the future with the likely range expansion of HABs due to climate change. 

ABSTRACT Winter is a relatively under-studied season in freshwater ecology. The paucity of wintertime surveys has led to a lack of knowledge regarding microbial community activity during the winter in Lake Erie, a North American Great Lake. Viruses shape microbial communities and regulate biogeochemical cycles by acting as top-down controls, yet very few efforts have been made to examine active virus populations during the winter in Lake Erie. Furthermore, climate change-driven declines in seasonal ice cover have been shown to influence microbial community structure, but no studies have compared viral community activity between different ice cover conditions. We surveyed surface water metatranscriptomes for viral hallmark genes as a proxy for active virus populations and compared activity metrics between ice-covered and ice-free conditions from two sampled winters. Transcriptionally active viral communities were detected in both winters, spanning diverse phylogenetic clades of putative bacteriophage (Caudoviricetes), giant viruses (Nucleocytoviricota, or NCLDV), and RNA viruses (Orthornavirae). However, viral community activity metrics revealed pronounced differences between the ice-covered and ice-free winters. Viral community composition was distinct between winters and viral hallmark gene richness was reduced in the ice-covered relative to the ice-free conditions. In addition, the observed differences in viral communities correlated with microbial community activity metrics. Overall, these findings contribute to our understanding of the viral populations that are active during the winter in Lake Erie and suggest that viral community activity may be associated with ice cover extent.IMPORTANCEAs seasonal ice cover is projected to become increasingly rare on large temperate lakes, there is a need to understand how microbial communities might respond to changing ice conditions. Although it is widely recognized that viruses impact microbial community structure and function, there is little known regarding wintertime viral activity or the relationship between viral activity and ice cover extent. Our metatranscriptomic analyses indicated that viruses were transcriptionally active in the winter surface waters of Lake Erie. These findings also expanded the known diversity of viral lineages in the Great Lakes. Notably, viral community activity metrics were significantly different between the two sampled winters. The pronounced differences we observed in active viral communities between the ice-covered and ice-free samples merit further research regarding how viral communities will function in future, potentially ice-free, freshwater systems. 

ABSTRACT The Winam Gulf in the Kenyan region of Lake Victoria experiences prolific, year-round cyanobacterial harmful algal blooms (cyanoHABs) which pose threats to human, livestock, and ecosystem health. To our knowledge, there is limited molecular research on the gulf’s cyanoHABs, and thus, the strategies employed for survival and proliferation by toxigenic cyanobacteria in this region remain largely unexplored. Here, we used metagenomics to analyze the Winam Gulf’s cyanobacterial composition, function, and biosynthetic potential.Dolichospermumwas the dominant bloom-forming cyanobacterium, co-occurring withMicrocystisat most sites.MicrocystisandPlanktothrixwere more abundant in shallow and turbid sites. Metagenome-assembled genomes (MAGs) ofDolichospermumharbored nitrogen fixation genes, suggesting diazotrophy as a potential mechanism supporting the proliferation ofDolichospermumin the nitrogen-limited gulf. Over 300 biosynthetic gene clusters (BGCs) putatively encoding the synthesis of toxins and other secondary metabolites were identified across the gulf, even at sites where there were no visible cyanoHAB events. Almost all BGCs identified had no known synthesis product, indicating a diverse and novel biosynthetic repertoire capable of synthesizing harmful or potentially therapeutic metabolites.MicrocystisMAGs containedmcygenes encoding the synthesis of hepatotoxic microcystins which are a concern for drinking water safety. These findings illustrate the spatial variation of bloom-forming cyanobacteria in the Winam Gulf and their available strategies to dominate different ecological niches. This study underscores the need for further use of genomic techniques to elucidate the dynamics and mitigate the potentially harmful effects of cyanoHABs and their associated toxins on human, environmental, and economic health. 

Abstract Lake Erie, USA–Canada, plays an important ecological and socioeconomic role but has suffered from chronic eutrophication. In particular, western Lake Erie (WLE) is the site of harmful algal blooms (HABs) which are suspected of being driven by excessive nutrient (phosphorus (P) and nitrogen (N)) inputs. During 2022 and 2023, in situ nutrient dilution and addition bioassays were conducted at a WLE bloom‐impacted location to investigate whether a nutrient reduction regime would be effective in limiting phytoplankton growth during the June diatom‐dominated spring blooms and August cyanobacteria‐dominated summer blooms. The primary objectives of this experiment were to (1) Determine if a proposed 40% P‐alone reduction would effectively reduce phytoplankton growth and mitigate blooms and (2) assess whether reductions in both P and N are more effective in controlling phytoplankton biomass than exclusive reductions in either N or P. Samples were analyzed for nutrient concentrations and growth rate responses for specific algal groups, utilizing diagnostic (for major algal groups) photopigments. Results indicated that although both 20% and 40% dilutions led to lower phytoplankton biomass and growth rates, 40% reductions were more effective. Our results support the USA–Canada Great Lakes Water Quality Agreement recommendation of a 40% P reduction, but also indicate that a parallel reduction of N input by 40% would be most effective in controlling bloom magnitudes. Overall, our findings underscore the recommendation that a year‐round dual N and P 40% reduction is needed for long‐term control of eutrophication and algal blooms, including cyanobacteria and diatoms, in Lake Erie. 

Abstract Terrestrial hydrological and nutrient cycles are subjected to major disturbances by agricultural operations and urbanization that profoundly influence freshwater resources. Non‐point source pollution is one of the primary causes for water quality deterioration, and thus an emerging imperative in limnology is establishing empirical models that connect watershed attributes and hydrological drivers with lake nutrient dynamics. Here, we compiled three nation‐wide nutrient, meteorological, and watershed‐landscape data sets, to develop Generalized Linear Models that predict lake phosphorus and nitrogen concentrations as a function of the surrounding watershed characteristics within various hydrological distances across 104 Chinese lakes and reservoirs. Our national‐scale investigation revealed that lake nutrient concentrations can be satisfactorily predicted by proxies of natural drivers and anthropogenic activities, reflecting the properties of the surrounding watershed. Counter to previous studies, we found that China's lake nutrient concentrations strongly depend on watershed characteristics within a hydrological distance of less than 45 km rather than the entire watershed. Furthermore, extensive human activities in watersheds not only compromise our predictive capacity, but also increase the hydrological distance that is relevant to predict lake nutrients. This national‐scale characterization can inform one of the most contentious issues in the context of China's lake management, that is, the determination of the extent of the nearshore area, where nutrient control should be prioritized. As far as we know, our study represents the first attempt to apply the concept of hydrological distance and establish statistical models that can delineate the critical spatial domain primarily responsible for the nutrient conditions along the watershed‐lake continuum. 

Abstract The Winam Gulf (Kenya) is frequently impaired by cyanobacterial harmful algal blooms (cHABs) due to inadequate wastewater treatment and excess agricultural nutrient input. While phytoplankton in Lake Victoria have been characterized using morphological criteria, our aim is to identify potential toxin‐producing cyanobacteria using molecular approaches. The Gulf was sampled over two successive summer seasons, and 16S and 18S ribosomal RNA gene sequencing was performed. Additionally, key genes involved in production of cyanotoxins were examined by quantitative PCR. Bacterial communities were spatially variable, forming distinct clusters in line with regions of the Gulf. Taxa associated with diazotrophy were dominant near Homa Bay. On the eastern side, samples exhibited elevatedcyrAabundances, indicating genetic capability of cylindrospermopsin synthesis. Indeed, near the Nyando River mouth in 2022,cyrAexceeded 10 million copies L⁻¹where there were more than 6000Cylindrospermopsisspp. cells mL⁻¹. In contrast, the southwestern region had elevatedmcyEgene (microcystin synthesis) detections near Homa Bay whereMicrocystisandDolichospermumspp. were observed. These findings show that within a relatively small embayment, composition and toxin synthesis potential of cHABs can vary dramatically. This underscores the need for multifaceted management approaches and frequent cyanotoxin monitoring to reduce human health impacts. 

Abstract The rediscovery of diatom blooms embedded within and beneath the Lake Erie ice cover (2007–2012) ignited interest in psychrophilic adaptations and winter limnology. Subsequent studies determined the vital role ice plays in winter diatom ecophysiology as diatoms partition to the underside of ice, thereby fixing their location within the photic zone. Yet, climate change has led to widespread ice decline across the Great Lakes, with Lake Erie presenting a nearly “ice-free” state in several recent winters. It has been hypothesized that the resultant turbid, isothermal water column induces light limitation amongst winter diatoms and thus serves as a competitive disadvantage. To investigate this hypothesis, we conducted a physiochemical and metatranscriptomic survey that spanned spatial, temporal, and climatic gradients of the winter Lake Erie water column (2019–2020). Our results suggest that ice-free conditions decreased planktonic diatom bloom magnitude and altered diatom community composition. Diatoms increased their expression of various photosynthetic genes and iron transporters, which suggests that the diatoms are attempting to increase their quantity of photosystems and light-harvesting components (a well-defined indicator of light limitation). We identified two gene families which serve to increase diatom fitness in the turbid ice-free water column: proton-pumping rhodopsins (a potential second means of light-driven energy acquisition) and fasciclins (a means to “raft” together to increase buoyancy and co-locate to the surface to optimize light acquisition). With large-scale climatic changes already underway, our observations provide insight into how diatoms respond to the dynamic ice conditions of today and shed light on how they will fare in a climatically altered tomorrow.