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ABSTRACT To better understand linkages between hydrology and ecosystem carbon flux in northern aquatic ecosystems, we evaluated the relationship between plant communities, biofilm development, and carbon dioxide (CO₂) exchange following long‐term changes in hydrology in an Alaskan fen. We quantified seasonal variation in biofilm composition and CO₂exchange in response to lowered and raised water table position (relative to a control) during years with varying levels of background dissolved organic carbon (DOC). We then used nutrient‐diffusing substrates (NDS) to evaluate cause–effect relationships between changes in plant subsidies (i.e., leachates) and biofilm composition among water table treatments. We found that background DOC concentration determined whether plant subsidies promoted net autotrophy or heterotrophy on NDS. In conditions where background DOC was ≤ 40 mg L⁻¹, plant subsidies promoted an autotrophic biofilm. Conversely, when background DOC concentration was ≥ 50 mg L⁻¹, plant subsidies promoted heterotrophy. Greater light attenuation associated with elevated levels of DOC may have overwhelmed the stimulatory effect of nutrients on autotrophic microbes by constraining photosynthesis while simultaneously allowing heterotrophs to outcompete autotrophs for available nutrients. At the ecosystem level, conditions that favored an autotrophic biofilm resulted in net CO₂uptake among all water table treatments, whereas the site was a net source of CO₂to the atmosphere in conditions that supported greater heterotrophy. Taken together, these findings show that hydrologic history interacts with changes in dominant plant functional groups to alter biofilm composition, which has consequences for ecosystem CO₂exchange. 

Abstract Shifts in plant functional groups associated with climate change have the potential to influence peatland carbon storage by altering the amount and composition of organic matter available to aquatic microbial biofilms. The goal of this study was to evaluate the potential for plant subsidies to regulate ecosystem carbon flux (CO₂) by governing the relative proportion of primary producers (microalgae) and heterotrophic decomposers (heterotrophic bacteria) during aquatic biofilm development in an Alaskan fen. We evaluated biofilm composition and CO₂flux inside mesocosms with and without nutrients (both nitrogen and phosphorus), organic carbon (glucose), and leachates from common peatland plants (moss, sedge, shrub, horsetail). Experimental mesocosms were exposed to either natural sunlight or placed under a dark canopy to evaluate the response of decomposers to nutrients and carbon subsidies with and without algae, respectively. Algae were limited by inorganic nutrients and heterotrophic bacteria were limited by organic carbon. The quality of organic matter varied widely among plants and leachate nutrient content, more so than carbon quality, influenced biofilm composition. By alleviating nutrient limitation of algae, plant leachates shifted the biofilm community toward autotrophy in the light-transparent treatments, resulting in a significant reduction in CO₂emissions compared to the control. Without the counterbalance from algal photosynthesis, a heterotrophic biofilm significantly enhanced CO₂emissions in the presence of plant leachates in the dark. These results show that plants not only promote carbon uptake directly through photosynthesis, but also indirectly through a surrogate, the phototrophic microbes. 

Globally important carbon (C) stores in boreal peatlands are vulnerable to altered hydrology through changes in precipitation and runoff patterns, groundwater inputs, and a changing cryosphere. These changes can affect the extent of boreal wetlands and their ability to sequester and transform C and other nutrients. Variation in precipitation patterns has also been increasing, with greater occurrences of both flooding and drought periods. Recent work has pointed to the increasing role of algal production in regulating C cycling during flooded periods in fen peatlands, but exactly how this affects the C sink-strength of these ecosystems is poorly understood. We evaluated temporal trends in algal biomass, ecosystem C uptake and respiration (using static and floating chamber techniques), and spectroscopic indicators of DOM quality (absorbance and fluorescence) in a boreal rich-fen peatland in which water table position had been experimentally manipulated for 13 years. Superimposed on the water table treatments were natural variations in hydrology, including periods of flooding, which allowed us to examine the legacy effects of flooding on C cycling dynamics. We had a particular focus on understanding the role of algae in regulating C cycling, as the relative contribution of algal production was observed to significantly increase with flooding. Ecosystem measures of gross primary production (GPP) increased with algal biomass, with higher algal biomass and GPP measured in the lowered water table treatment two years after persistent flooding. Prior to flooding the lowered treatment was the weakest C sink (as CO 2 ), but this treatment became the strongest sink after flooding. The lower degree of humification (lower humification index, HIX) and yet lower bioavailability (higher spectral slope ratio, Sr) of DOM observed in the raised treatment prior to flooding persisted after two years of flooding. An index of free or bound proteins (tyrosine index, TI) increased with algal biomass across all plots during flooding, and was lowest in the raised treatment. As such, antecedent drainage conditions determined the sink-strength of this rich fen—which was also reflected in DOM characteristics. These findings indicate that monitoring flooding history and its effects on algal production could become important to estimates of C balance in northern wetlands.