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1. Evolution of the nitric oxide synthase family in vertebrates and novel insights in gill development

   https://doi.org/10.1098/rspb.2022.0667  

   Annona, Giovanni ; Sato, Iori ; Pascual-Anaya, Juan ; Osca, David ; Braasch, Ingo ; Voss, Randal ; Stundl, Jan ; Soukup, Vladimir ; Ferrara, Allyse ; Fontenot, Quenton ; et al ( August 2022 , Proceedings of the Royal Society B: Biological Sciences)

   Nitric oxide (NO) is an ancestral key signalling molecule essential for life and has enormous versatility in biological systems, including cardiovascular homeostasis, neurotransmission and immunity. Although our knowledge of NO synthases (Nos), the enzymes that synthesize NO in vivo , is substantial, the origin of a large and diversified repertoire of nos gene orthologues in fishes with respect to tetrapods remains a puzzle. The recent identification of nos3 in the ray-finned fish spotted gar, which was considered lost in this lineage, changed this perspective. This finding prompted us to explore nos gene evolution, surveying vertebrate species representing key evolutionary nodes. This study provides noteworthy findings: first, nos2 experienced several lineage-specific gene duplications and losses. Second, nos3 was found to be lost independently in two different teleost lineages, Elopomorpha and Clupeocephala. Third, the expression of at least one nos paralogue in the gills of developing shark, bichir, sturgeon, and gar, but not in lamprey, suggests that nos expression in this organ may have arisen in the last common ancestor of gnathostomes. These results provide a framework for continuing research on nos genes’ roles, highlighting subfunctionalization and reciprocal loss of function that occurred in different lineages during vertebrate genome duplications. 

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2. Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer

   https://doi.org/10.1073/pnas.2011531117  

   Barske, Lindsey ; Fabian, Peter ; Hirschberger, Christine ; Jandzik, David ; Square, Tyler ; Xu, Pengfei ; Nelson, Nellie ; Yu, Haoze Vincent ; Medeiros, Daniel M. ; Gillis, J. Andrew ; et al ( September 2020 , Proceedings of the National Academy of Sciences)

   Whereas the gill chambers of jawless vertebrates open directly into the environment, jawed vertebrates evolved skeletal appendages that drive oxygenated water unidirectionally over the gills. A major anatomical difference between the two jawed vertebrate lineages is the presence of a single large gill cover in bony fishes versus separate covers for each gill chamber in cartilaginous fishes. Here, we find that these divergent patterns correlate with the pharyngeal arch expression of Pou3f3 orthologs. We identify a deeply conserved Pou3f3 arch enhancer present in humans through sharks but undetectable in jawless fish. Minor differences between the bony and cartilaginous fish enhancers account for their restricted versus pan-arch expression patterns. In zebrafish, mutation of Pou3f3 or the conserved enhancer disrupts gill cover formation, whereas ectopic pan-arch Pou3f3b expression generates ectopic skeletal elements resembling the multimeric covers of cartilaginous fishes. Emergence of this Pou3f3 arch enhancer >430 Mya and subsequent modifications may thus have contributed to the acquisition and diversification of gill covers and respiratory strategies during gnathostome evolution.

    

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3. Functional coupling in the evolution of suction feeding and gill ventilation of sculpins (Perciformes: Cottoidei)

   https://doi.org/10.1093/icb/icz022  

   Farina, S. C. ; Knope, M. L. ; Corn, K. A. ; Summers, A. P. ; Bemis, W. E. ( April 2019 , Integrative and Comparative Biology)

   Suction feeding and gill ventilation in teleosts are functionally coupled, meaning that there is an overlap in the structures involved with both functions. Functional coupling is one type of morphological integration, a term that broadly refers to any covariation, correlation, or coordination among structures. Suction feeding and gill ventilation exhibit other types of morphological integration, including functional coordination (a tendency of structures to work together to perform a function) and evolutionary integration (a tendency of structures to covary in size or shape across evolutionary history). Functional coupling, functional coordination, and evolutionary integration have each been proposed to limit morphological diversification to some extent. Yet teleosts show extraordinary cranial diversity, suggesting that there are mechanisms within some teleost clades that promote morphological diversification, even within the highly integrated suction feeding and gill ventilatory systems. To investigate this, we quantified evolutionary integration among four mechanical units associated with suction feeding and gill ventilation in a diverse clade of benthic, primarily suction-feeding fishes (Cottoidei; sculpins and relatives). We reconstructed cottoid phylogeny using molecular data from 108 species, and obtained 24 linear measurements of four mechanical units (jaws, hyoid, opercular bones, and branchiostegal rays) from micro-CT reconstructions of 44 cottoids and 1 outgroup taxon. We tested for evolutionary correlation and covariation among the four mechanical units using phylogenetically corrected principal component analysis to reduce the dimensionality of measurements for each unit, followed by correlating phylogenetically independent contrasts and computing phylogenetic generalized least squares models from the first principle component axis of each of the four mechanical units. The jaws, opercular bones, and branchiostegal rays show evolutionary integration, but the hyoid is not positively integrated with these units. To examine these results in an ecomorphological context, we used published ecological data in phylogenetic ANOVA models to demonstrate that the jaw is larger in fishes that eat elusive or grasping prey (e.g., prey that can easily escape or cling to the substrate) and that the hyoid is smaller in intertidal and hypoxia-tolerant sculpins. Within Cottoidei, the relatively independent evolution of the hyoid likely has reduced limitations on morphological evolution within the highly morphologically integrated suction feeding and gill ventilatory systems.

    

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4. Riparian canopy openings on mountain streams: Landscape controls upon temperature increases within openings and cooling downstream

   https://doi.org/10.1002/hyp.13706  

   Coats, William Alan ; Jackson, Charles Rhett ( February 2020 , Hydrological Processes)

   How much stream temperatures increase within riparian canopy openings and whether stream temperatures cool downstream of these openings both have important policy implications. Past studies of stream cooling downstream of riparian openings have found mixed results including rapid, slow, and no cooling. We collected longitudinal profiles of stream temperatures above, within, and below riparian forest openings along stream segments within otherwise forested riparian conditions to evaluate how sensitivity of stream temperatures to riparian conditions varied across landscape factors. We conducted these temperature surveys across openings in 12 wadeable streams within and near the Upper Little Tennessee River Basin in western North Carolina and northeastern Georgia. Basin areas ranged from 74 to 6,913 ha, and bankfull channel widths varied from 3.4 to 16.4 m. Stream temperatures were collected every 15 min using HOBO® data loggers for 2 weeks in each stream, repeated later in summer in some streams. Reference temperatures were highest in stream reaches at low elevations and with large drainage areas. Stream temperature increases in the middle of riparian gaps were highest when streams drained small high‐elevation watersheds, and increases at the end of openings were highest when the opening length was large relative to watershed size. Downstream from openings, cooling rates were greatest in small, high‐elevation headwater streams and also increased with larger increases in canopy cover. Stream segments that warmed the most within openings also featured higher cooling rates downstream. The data show that stream temperature sensitivity to canopy change is highly dependent on network position and watershed size. A better understanding of stream temperature responses to riparian vegetation may be useful to land managers and landowners prioritizing riparian forest restoration.

    

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5. The dynamics of granular flow from a silo with two symmetric openings

   https://doi.org/10.1098/rspa.2018.0462  

   Fullard, L. A. ; Breard, E. C. ; Davies, C. E. ; Godfrey, A. J. ; Fukuoka, M. ; Wade, A. ; Dufek, J. ; Lube, G. ( January 2019 , Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences)