Recognizing entity synonyms from text has become a crucial task in many entity-leveraging applications. However, discovering entity synonyms from domain-specific text corpora (e.g., news articles, scientific papers) is rather challenging. Current systems take an entity name string as input to find out other names that are synonymous, ignoring the fact that often times a name string can refer to multiple entities (e.g., “apple” could refer to both Apple Inc and the fruit apple). Moreover, most existing methods require training
data manually created by domain experts to construct supervised learning systems. In this paper, we study the problem of automatic synonym discovery with knowledge bases, that is, identifying synonyms for knowledge base entities in a given domain-specific corpus.
The manually-curated synonyms for each entity stored in a knowledge base not only form a set of name strings to disambiguate the meaning for each other, but also can serve as “distant” supervision to help determine important features for the task. We propose a novel framework, called DPE, to integrate two kinds of mutually complementing signals for synonym discovery, i.e., distributional features based on corpus-level statistics and textual patterns based on local contexts. In particular, DPE jointly optimizes the two kinds of signals in conjunction with distant supervision, so that they can mutually enhance each other in the training stage. At the inference stage, both signals will be utilized to discover synonyms for the given entities. Experimental results prove the effectiveness of the
proposed framework.
more »
« less
LitStoryTeller+: an interactive system for multi-level scientific paper visual storytelling with a supportive text mining toolbox
The continuing growth of scientific publications has posed a double-challenge to researchers, to not only grasp the overall research trends in a scientific domain, but also get down to research details embedded in a collection of core papers. Existing work on science mapping provides multiple tools to visualize research trends in domain on macro-level, and work from the digital humanities have proposed text visualization of documents, topics, sentences, and words on micro-level. However, existing micro-level text visualizations are not tailored for scientific paper corpus, and cannot support meso-level scientific reading, which aligns a set of core papers based on their research progress, before drilling down to individual papers. To bridge this gap, the present paper proposes LitStoryTeller+, an interactive system under a unified framework that can support both meso-level and micro-level scientific paper visual storytelling. More specifically, we use entities (concepts and terminologies) as basic visual elements, and visualize entity storylines across papers and within a paper borrowing metaphors from screen play. To identify entities and entity communities, named entity recognition and community detection are performed. We also employ a variety of text mining methods such as extractive text summarization and comparative sentence classification to provide rich textual information supplementary to our visualizations. We also propose a top-down story-reading strategy that best takes advantage of our system. Two comprehensive hypothetical walkthroughs to explore documents from the computer science domain and history domain with our system demonstrate the effectiveness of our story-reading strategy and the usefulness of LitStoryTeller+.
more »
« less
- Award ID(s):
- 1633286
- NSF-PAR ID:
- 10063055
- Date Published:
- Journal Name:
- Scientometrics
- ISSN:
- 0138-9130
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
null (Ed.)The Twitter-Based Knowledge Graph for Researchers project is an effort to construct a knowledge graph of computation-based tasks and corresponding outputs. It will be utilized by subject matter experts, statisticians, and developers. A knowledge graph is a directed graph of knowledge accumulated from a variety of sources. For our application, Subject Matter Experts (SMEs) are experts in their respective non-computer science fields, but are not necessarily experienced with running heavy computation on datasets. As a result, they find it difficult to generate workflows for their projects involving Twitter data and advanced analysis. Workflow management systems and libraries that facilitate computation are only practical when the users of these systems understand what analysis they need to perform. Our goal is to bridge this gap in understanding. Our queryable knowledge graph will generate a visual workflow for these experts and researchers to achieve their project goals. After meeting with our client, we established two primary deliverables. First, we needed to create an ontology of all Twitter-related information that an SME might want to answer. Secondly, we needed to build a knowledge graph based on this ontology and produce a set of APIs to trigger a set of network algorithms based on the information queried to the graph. An ontology is simply the class structure/schema for the graph. Throughout future meetings, we established some more specific additional requirements. Most importantly, the client stressed that users should be able to bring their own data and add it to our knowledge graph. As more research is completed and new technologies are released, it will be important to be able to edit and add to the knowledge graph. Next, we must be able to provide metrics about the data itself. These metrics will be useful for both our own work, and future research surrounding graph search problems and search optimization. Additionally, our system should provide users with information regarding the original domain that the algorithms and workflows were run against. That way they can choose the best workflow for their data. The project team first conducted a literature review, reading reports from the CS5604 Information Retrieval courses in 2016 and 2017 to extract information related to Twitter data and algorithms. This information was used to construct our raw ontology in Google Sheets, which contained a set of dataset-algorithm-dataset tuples. The raw ontology was then converted into nodes and edges csv files for building the knowledge graph. After implementing our original solution on a CentOS virtual machine hosted by the Virginia Tech Department of Computer Science, we transitioned our solution to Grakn, an open-source knowledge graph database that supports hypergraph functionality. When finalizing our workflow paths, we noted some nodes depended on completion of two or more inputs, representing an ”AND” edge. This phenomenon is modeled as a hyperedge with Grakn, initiating our transition from Neo4J to Grakn. Currently, our system supports queries through the console, where a user can type a Graql statement to retrieve information about data in the graph, from relationships to entities to derived rules. The user can also interact with the data via Grakn's data visualizer: Workbase. The user can enter Graql queries to visualize connections within the knowledge graph.more » « less
-
null (Ed.)Subject categories of scholarly papers generally refer to the knowledge domain(s) to which the papers belong, examples being computer science or physics. Subject category classification is a prerequisite for bibliometric studies, organizing scientific publications for domain knowledge extraction, and facilitating faceted searches for digital library search engines. Unfortunately, many academic papers do not have such information as part of their metadata. Most existing methods for solving this task focus on unsupervised learning that often relies on citation networks. However, a complete list of papers citing the current paper may not be readily available. In particular, new papers that have few or no citations cannot be classified using such methods. Here, we propose a deep attentive neural network (DANN) that classifies scholarly papers using only their abstracts. The network is trained using nine million abstracts from Web of Science (WoS). We also use the WoS schema that covers 104 subject categories. The proposed network consists of two bi-directional recurrent neural networks followed by an attention layer. We compare our model against baselines by varying the architecture and text representation. Our best model achieves micro- F 1 measure of 0.76 with F 1 of individual subject categories ranging from 0.50 to 0.95. The results showed the importance of retraining word embedding models to maximize the vocabulary overlap and the effectiveness of the attention mechanism. The combination of word vectors with TFIDF outperforms character and sentence level embedding models. We discuss imbalanced samples and overlapping categories and suggest possible strategies for mitigation. We also determine the subject category distribution in CiteSeerX by classifying a random sample of one million academic papers.more » « less
-
null (Ed.)Acknowledgements are ubiquitous in scholarly papers. Existing acknowledgement entity recognition methods assume all named entities are acknowledged. Here, we examine the nuances between acknowledged and named entities by analyzing sentence structure. We develop an acknowledgement extraction system, ACKEXTRACT based on open-source text mining software and evaluate our method using manually labeled data. ACKEXTRACT uses the PDF of a scholarly paper as input and outputs acknowledgement entities. Results show an overall performance of F1 = 0:92. We built a supplementary database by linking CORD-19 papers with acknowledgement entities extracted by ACKEXTRACT including persons and organizations and find that only up to 50–60% of named entities are actually acknowledged. We further analyze chronological trends of acknowledgement entities in CORD-19 papers. All codes and labeled data are publicly available at https://github.com/ lamps-lab/ackextract.more » « less
-
Recent literature focuses on utilizing the entity information in the sentence-level relation extraction (RE), but this risks leaking superficial and spurious clues of relations. As a result, RE still suffers from unintended entity bias, i.e., the spurious correlation between entity mentions (names) and relations. Entity bias can mislead the RE models to extract the relations that do not exist in the text. To combat this issue, some previous work masks the entity mentions to prevent the RE models from over-fitting entity mentions. However, this strategy degrades the RE performance because it loses the semantic information of entities. In this paper, we propose the CoRE (Counterfactual Analysis based Relation Extraction) debiasing method that guides the RE models to focus on the main effects of textual context without losing the entity information. We first construct a causal graph for RE, which models the dependencies between variables in RE models. Then, we propose to conduct counterfactual analysis on our causal graph to distill and mitigate the entity bias, that captures the causal effects of specific entity mentions in each instance. Note that our CoRE method is model-agnostic to debias existing RE systems during inference without changing their training processes. Extensive experimental results demonstrate that our CoRE yields significant gains on both effectiveness and generalization for RE. The source code is provided at: https://github.com/vanoracai/CoRE.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1007/s11192-018-2803-x
