An official website of the United States government
Nowadays, scientific simulations on high-performance computing (HPC) systems can generate large amounts of data (in the scale of terabytes or petabytes) per run. When this huge amount of HPC data is processed by machine learning applications, the training overhead will be significant. Typically, the training process for a neural network can take several hours to complete, if not longer. When machine learning is applied to HPC scientific data, the training time can take several days or even weeks. Transfer learning, an optimization usually used to save training time or achieve better performance, has potential for reducing this large training overhead. In this paper, we apply transfer learning to a machine learning HPC application. We find that transfer learning can reduce training time without, in most cases, significantly increasing the error. This indicates transfer learning can be very useful for working with HPC datasets in machine learning applications.
more »
« less
Machine Learning Models for GPU Error Prediction in a Large Scale HPC System
GPUs are widely deployed on large-scale HPC systems to provide powerful computational capability for scientific applications from various domains. As those applications are normally long-running, investigating the characteristics of GPU errors becomes imperative for reliability. In this paper, we first study the system conditions that trigger GPU errors using six-month trace data collected from a large-scale, operational HPC system. Then, we use machine learning to predict the occurrence of GPU errors, by taking advantage of temporal and spatial dependencies of the trace data. The resulting machine learning prediction framework is robust and accurate under different workloads.
more »
« less
- PAR ID:
- 10065578
- Date Published:
- Journal Name:
- 2018 48th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN)
- Page Range / eLocation ID:
- 95 to 106
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Deep Neural Networks (DNNs) have been applied as an effective machine learning algorithm to tackle problems in different domains. However, the endeavor to train sophisticated DNN models can stretch from days into weeks, presenting substantial obstacles in the realm of research focused on large-scale DNN architectures. Distributed Deep Learning (DDL) contributes to accelerating DNN training by distributing training workloads across multiple computation accelerators, for example, graphics processing units (GPUs). Despite the considerable amount of research directed toward enhancing DDL training, the influence of data loading on GPU utilization and overall training efficacy remains relatively overlooked. It is non-trivial to optimize data-loading in DDL applications that need intensive central processing unit (CPU) and input/output (I/O) resources to process enormous training data. When multiple DDL applications are deployed on a system (e.g., Cloud and High-Performance Computing (HPC) system), the lack of a practical and efficient technique for data-loader allocation incurs GPU idleness and degrades the training throughput. Therefore, our work first focuses on investigating the impact of data-loading on the global training throughput. We then propose a throughput prediction model to predict the maximum throughput for an individual DDL training application. By leveraging the predicted results, A-Dloader is designed to dynamically allocate CPU and I/O resources to concurrently running DDL applications and use the data-loader allocation as a knob to reduce GPU idle intervals and thus improve the overall training throughput. We implement and evaluate A-Dloader in a DDL framework for a series of DDL applications arriving and completing across the runtime. Our experimental results show that A-Dloader can achieve a 28.9% throughput improvement and a 10% makespan improvement compared with allocating resources evenly across applications.more » « less
-
Scientific communities are increasingly adopting machine learning and deep learning models in their applications to accelerate scientific insights. High performance computing systems are pushing the frontiers of performance with a rich diversity of hardware resources and massive scale-out capabilities. There is a critical need to understand fair and effective benchmarking of machine learning applications that are representative of real-world scientific use cases. MLPerf ™ is a community-driven standard to benchmark machine learning workloads, focusing on end-to-end performance metrics. In this paper, we introduce MLPerf HPC, a benchmark suite of large-scale scientific machine learning training applications, driven by the MLCommons ™ Association. We present the results from the first submission round including a diverse set of some of the world’s largest HPC systems. We develop a systematic framework for their joint analysis and compare them in terms of data staging, algorithmic convergence and compute performance. As a result, we gain a quantitative understanding of optimizations on different subsystems such as staging and on-node loading of data, compute-unit utilization and communication scheduling enabling overall >10× (end-to-end) performance improvements through system scaling. Notably, our analysis shows a scale-dependent interplay between the dataset size, a system’s memory hierarchy and training convergence that underlines the importance of near-compute storage. To overcome the data-parallel scalability challenge at large batch-sizes, we discuss specific learning techniques and hybrid data-and-model parallelism that are effective on large systems. We conclude by characterizing each benchmark with respect to low-level memory, I/O and network behaviour to parameterize extended roofline performance models in future rounds.more » « less
-
GPU memory corruption and in particular double-bit errors (DBEs) remain one of the least understood aspects of HPC system reliability. Albeit rare, their occurrences always lead to job termination and can potentially cost thousands of node-hours, either from wasted com- putations or as the overhead from regular checkpointing needed to minimize the losses. As supercomputers and their components simultaneously grow in scale, density, failure rates, and environ- mental footprint, the eciency of HPC operations becomes both an imperative and a challenge. We examine DBEs using system telemetry data and logs col- lected from the Summit supercomputer, equipped with 27,648 Tesla V100 GPUs with 2nd-generation high-bandwidth memory (HBM2). Using exploratory data analysis and statistical learning, we extract several insights about memory reliability in such GPUs. We nd that GPUs with prior DBE occurrences are prone to experience them again due to otherwise harmless factors, correlate this phenomenon with GPU placement, and suggest manufacturing variability as a factor. On the general population of GPUs, we link DBEs to short- and long-term high power consumption modes while finding no signifcant correlation with higher temperatures. We also show that the workload type can be a factor in memory’s propensity to corruption.more » « less
-
With the rapid growth of the machine learning applications, the workloads of future HPC systems are anticipated to be a mix of scientific simulation, big data analytics, and machine learning applications. Simulation is a great research vehicle to understand the performance implications of co-running scientific applications with big data and machine learning workloads on large-scale systems. In this paper, we present Union, a workload manager that provides an automatic framework to facilitate hybrid workload simulation in CODES. Furthermore, we use Union, along with CODES, to investigate various hybrid workloads composed of traditional simulation applications and emerging learning applications on two dragonfly systems. The experiment results show that both message latency and communication time are important performance metrics to evaluate network interference. Network interference on HPC applications is more reflected by the message latency variation, whereas ML application performance depends more on the communication time.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Conference Paper:
- https://doi.org/10.1109/DSN.2018.00022
