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Abstract Pseudomonas aeruginosa is a major contributor to human infections and is widely distributed in the environment. Its ability for growth under aerobic and anaerobic conditions provides adaptability to environmental changes and in confronting immune responses. We applied native 2-dimensional metalloproteomics to P. aeruginosa to examine how use of iron within the metallome responds to oxic and anoxic conditions. Analyses revealed four iron peaks comprised of metalloproteins with synergistic functions, including (1) respiratory and metabolic enzymes, (2) oxidative stress response enzymes, (3) DNA synthesis and nitrogen assimilation enzymes, and (4) denitrification enzymes and related copper enzymes. Fe Peaks were larger under anoxic conditions, consistent with increased iron demand due to anaerobic metabolism and with the denitrification peak absent under oxic conditions. Three ferritins co-eluted with the first and third iron peaks, localizing iron storage with these functions. Several enzymes were more abundant at low oxygen, including alkylhydroperoxide reductase C that deactivates organic radicals produced by denitrification, all three classes of ribonucleotide reductases (including monomer and oligomer forms), ferritin (increasing in ratio relative to bacterioferritin), and denitrification enzymes. Superoxide dismutase and homogentisate 1,2-dioxygenase were more abundant at high oxygen. Several Fe Peaks contained iron metalloproteins that co-eluted earlier than their predicted size, implying additional protein–protein interactions and suggestive of cellular organization that contributes to iron prioritization in Pseudomonas with its large genome and flexible metabolism. This study characterized the iron metalloproteome of one of the more complex prokaryotic microorganisms, attributing enhanced iron use under anaerobic denitrifying metabolism to its specific metalloprotein constituents.
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Oxygenated Mesoproterozoic lake revealed through magnetic mineralogy
Terrestrial environments have been suggested as an oxic haven for eukaryotic life and diversification during portions of the Proterozoic Eon when the ocean was dominantly anoxic. However, iron speciation and Fe/Al data from the ca. 1.1-billion-year-old Nonesuch Formation, deposited in a large lake and bearing a diverse assemblage of early eukaryotes, are interpreted to indicate persistently anoxic conditions. To shed light on these distinct hypotheses, we analyzed two drill cores spanning the transgression into the lake and its subsequent shallowing. While the proportion of highly reactive to total iron (Fe HR /Fe T ) is consistent through the sediments and typically in the range taken to be equivocal between anoxic and oxic conditions, magnetic experiments and petrographic data reveal that iron exists in three distinct mineral assemblages resulting from an oxycline. In the deepest waters, reductive dissolution of iron oxides records an anoxic environment. However, the remainder of the sedimentary succession has iron oxide assemblages indicative of an oxygenated environment. At intermediate water depths, a mixed-phase facies with hematite and magnetite indicates low oxygen conditions. In the shallowest waters of the lake, nearly every iron oxide has been oxidized to its most oxidized form, hematite. Combining magnetics and textural analyses results in a more nuanced understanding of ambiguous geochemical signals and indicates that for much of its temporal duration, and throughout much of its water column, there was oxygen in the waters of Paleolake Nonesuch.
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- PAR ID:
- 10082829
- Date Published:
- Journal Name:
- Proceedings of the National Academy of Sciences
- Volume:
- 115
- Issue:
- 51
- ISSN:
- 0027-8424
- Page Range / eLocation ID:
- 12938 to 12943
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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The Nonesuch Formation microbiota provide a window into ca. 1075 Ma life within the interior of ancient North America. The Nonesuch water body formed following the cessation of widespread volcanism within the Midcontinent Rift as the basin continued to subside. In northern Michigan and Wisconsin, USA, the Copper Harbor Conglomerate records terrestrial alluvial fan and fluvial plain environments that transitioned into subaqueous lacustrine deposition of the Nonesuch Formation. These units thin toward a paleotopographic high associated with the Brownstone Falls angular unconformity. Due to these “Brownstone Highlands,” we were able to explore the paleoenvironment laterally at different depths in contemporaneous deposits. Rock magnetic data constrain that when the lake was shallow, it was oxygenated as evidenced by an oxidized mineral assemblage. Oxygen levels were lower at greater depth—in the deepest portions of the water body, anoxic conditions are recorded. An intermediate facies in depth and redox between these endmembers preserves detrital magnetite and hematite, which can be present in high abundance due to the proximal volcanic highlands. This magnetic facies enabled the development of a paleomagnetic pole based on both detrital magnetite and hematite that constrains the paleolatitude of the lake to 7.1 ± 2.8°N. Sediments of the intermediate facies preserve exquisite organic-walled microfossils, with microfossils being less diverse to absent in the anoxic facies where amorphous organic matter is more likely to be preserved. The assemblage of cyanobacteria and eukaryotes (both photoautotrophs and heterotrophs) lived within the oxygenated waters of this tropical Mesoproterozoic water body.more » « less
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1073/pnas.1813493115
