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ABSTRACT Experiments have long been the gold standard for causal inference in Ecology. As Ecology tackles progressively larger problems, however, we are moving beyond the scales at which randomised controlled experiments are feasible. To answer causal questions at scale, we need to also use observational data —something Ecologists tend to view with great scepticism. The major challenge using observational data for causal inference is confounding variables: variables affecting both a causal variable and response of interest. Unmeasured confounders—known or unknown—lead to statistical bias, creating spurious correlations and masking true causal relationships. To combat this omitted variable bias, other disciplines have developed rigorous approaches for causal inference from observational data that flexibly control for broad suites of confounding variables. We show how ecologists can harness some of these methods—causal diagrams to identify confounders coupled with nested sampling and statistical designs—to reduce risks of omitted variable bias. Using an example of estimating warming effects on snails, we show how current methods in Ecology (e.g., mixed models) produce incorrect inferences due to omitted variable bias and how alternative methods can eliminate it, improving causal inferences with weaker assumptions. Our goal is to expand tools for causal inference using observational and imperfect experimental data in Ecology.
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Causal Inference with Noisy and Missing Covariates via Matrix Factorization
Valid causal inference in observational studies often requires controlling for confounders. However, in practice measurements of confounders may be noisy, and can lead to biased estimates of causal effects. We show that we can reduce bias induced by measurement noise using a large number of noisy measurements of the underlying confounders. We propose the use of matrix factorization to infer the confounders from noisy covariates. This flexible and principled framework adapts to missing values, accommodates a wide variety of data types, and can enhance a wide variety of causal inference methods. We bound the error for the induced average treatment effect estimator and show it is consistent in a linear regression setting, using Exponential Family Matrix Completion preprocessing. We demonstrate the effectiveness of the proposed procedure in numerical experiments with both synthetic data and real clinical data.
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- Award ID(s):
- 1656996
- PAR ID:
- 10092366
- Date Published:
- Journal Name:
- Advances in neural information processing systems
- Volume:
- 31
- ISSN:
- 1049-5258
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Accepted Manuscript1.0
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