skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: The Shape of Sound: a Geometric Morphometrics Approach to Laryngeal Functional Morphology
Diversification of animal vocalizations plays a key role in behavioral evolution and speciation. Vocal organ morphology represents an important source of acoustic variation, yet its small size, complex shape, and absence of homologous landmarks pose major challenges to comparative analyses. Here, we use a geometric morphometric approach based on geometrically homologous landmarks to quantify shape variation of laryngeal cartilages of four rodent genera representing three families. Reconstructed cartilages of the larynx from contrast-enhanced micro-CT images were quantified by variable numbers of three-dimensional landmarks placed on structural margins and major surfaces. Landmark sets were superimposed using generalized Procrustes analysis prior to statistical analysis. Correlations among pairwise Procrustes distances were used to identify the minimum number of landmarks necessary to fully characterize shape variation. We found that the five species occupy distinct positions in morphospace, with variation explained in part by phylogeny, body size, and differences in vocal production mechanisms. Our findings provide a foundation for quantifying the contribution of vocal organ morphology to acoustic diversification.  more » « less
Award ID(s):
1754332 1755429
PAR ID:
10094372
Author(s) / Creator(s):
; ; ;
Date Published:
Journal Name:
Journal of Mammalian Evolution
ISSN:
1064-7554
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. null (Ed.)
    Purpose The larynx plays a role in swallowing, respiration, and voice production. All three functions change during ontogeny. We investigated ontogenetic shape changes using a mouse model to inform our understanding of how laryngeal form and function are integrated. We understand the characterization of developmental changes to larynx anatomy as a critical step toward using rodent models to study human vocal communication disorders. Method Contrast-enhanced micro-computed tomography image stacks were used to generate three-dimensional reconstructions of the CD-1 mouse ( Mus musculus ) laryngeal cartilaginous framework. Then, we quantified size and shape in four age groups: pups, weanlings, young, and old adults using a combination of landmark and linear morphometrics. We analyzed postnatal patterns of growth and shape in the laryngeal skeleton, as well as morphological integration among four laryngeal cartilages using geometric morphometric methods. Acoustic analysis of vocal patterns was employed to investigate morphological and functional integration. Results Four cartilages scaled with negative allometry on body mass. Additionally, thyroid, arytenoid, and epiglottic cartilages, but not the cricoid cartilage, showed shape change associated with developmental age. A test for modularity between the four cartilages suggests greater independence of thyroid cartilage shape, hinting at the importance of embryological origin during postnatal development. Finally, mean fundamental frequency, but not fundamental frequency range, varied predictably with size. Conclusion In a mouse model, the four main laryngeal cartilages do not develop uniformly throughout the first 12 months of life. High-dimensional shape analysis effectively quantified variation in shape across development and in relation to size, as well as clarifying patterns of covariation in shape among cartilages and possibly the ventral pouch. Supplemental Material https://doi.org/10.23641/asha.12735917 
    more » « less
  2. null (Ed.)
    Synopsis Pygopodids are elongate, functionally limbless geckos found throughout Australia. The clade presents low taxonomic diversity (∼45 spp.), but a variety of cranial morphologies, habitat use, and locomotor abilities that vary between and within genera. In order to assess potential relationships between cranial morphology and ecology, computed tomography scans of 29 species were used for 3D geometric morphometric analysis. A combination of 24 static landmarks and 20 sliding semi-landmarks were subjected to Generalized Procrustes Alignment. Disparity in cranial shape was visualized through Principal Component Analysis, and a multivariate analysis of variance (MANOVA) was used to test for an association between shape, habitat, and diet. A subset of 27 species with well-resolved phylogenetic relationships was used to generate a phylomorphospace and conduct phylogeny-corrected MANOVA. Similar analyses were done solely on Aprasia taxa to explore species-level variation. Most of the variation across pygopodids was described by principal component (PC) 1(54%: cranial roof width, parabasisphenoid, and occipital length), PC2 (12%: snout elongation and braincase width), and PC3 (6%: elongation and shape of the palate and rostrum). Without phylogenetic correction, both habitat and diet were significant influencers of variation in cranial morphology. However, in the phylogeny-corrected MANOVA, habitat remained weakly significant, but not diet, which can be explained by generic-level differences in ecology rather than among species. Our results demonstrate that at higher levels, phylogeny has a strong effect on morphology, but that influence may be due to small sample size when comparing genera. However, because some closely related taxa occupy distant regions of morphospace, diverging diets, and use of fossorial habitats may contribute to variation seen in these geckos. 
    more » « less
  3. Abstract The field of comparative morphology has entered a new phase with the rapid generation of high-resolution three-dimensional (3D) data. With freely available 3D data of thousands of species, methods for quantifying morphology that harness this rich phenotypic information are quickly emerging. Among these techniques, high-density geometric morphometric approaches provide a powerful and versatile framework to robustly characterize shape and phenotypic integration, the covariances among morphological traits. These methods are particularly useful for analyses of complex structures and across disparate taxa, which may share few landmarks of unambiguous homology. However, high-density geometric morphometrics also brings challenges, for example, with statistical, but not biological, covariances imposed by placement and sliding of semilandmarks and registration methods such as Procrustes superimposition. Here, we present simulations and case studies of high-density datasets for squamates, birds, and caecilians that exemplify the promise and challenges of high-dimensional analyses of phenotypic integration and modularity. We assess: (1) the relative merits of “big” high-density geometric morphometrics data over traditional shape data; (2) the impact of Procrustes superimposition on analyses of integration and modularity; and (3) differences in patterns of integration between analyses using high-density geometric morphometrics and those using discrete landmarks. We demonstrate that for many skull regions, 20–30 landmarks and/or semilandmarks are needed to accurately characterize their shape variation, and landmark-only analyses do a particularly poor job of capturing shape variation in vault and rostrum bones. Procrustes superimposition can mask modularity, especially when landmarks covary in parallel directions, but this effect decreases with more biologically complex covariance patterns. The directional effect of landmark variation on the position of the centroid affects recovery of covariance patterns more than landmark number does. Landmark-only and landmark-plus-sliding-semilandmark analyses of integration are generally congruent in overall pattern of integration, but landmark-only analyses tend to show higher integration between adjacent bones, especially when landmarks placed on the sutures between bones introduces a boundary bias. Allometry may be a stronger influence on patterns of integration in landmark-only analyses, which show stronger integration prior to removal of allometric effects compared to analyses including semilandmarks. High-density geometric morphometrics has its challenges and drawbacks, but our analyses of simulated and empirical datasets demonstrate that these potential issues are unlikely to obscure genuine biological signal. Rather, high-density geometric morphometric data exceed traditional landmark-based methods in characterization of morphology and allow more nuanced comparisons across disparate taxa. Combined with the rapid increases in 3D data availability, high-density morphometric approaches have immense potential to propel a new class of studies of comparative morphology and phenotypic integration. 
    more » « less
  4. The foot plays a prominent role in weight-bearing suggesting it may reflect locomotor variation. Despite the immense amount of foot research, the calcaneus has been relatively understudied. Here we analyzed the entire calcaneal shape of Gorilla gorilla gorilla (n=41), Gorilla beringei graueri (n=17) and Gorilla beringei beringei (n=8) to understand how morphology relates to locomotor behavior. Calcanei were surface scanned and external shape analyzed using a three-dimensional geometric morphometric sliding semilandmark analysis. Semilandmarks were slid to minimize the bending energy of the thin plate spline interpolation function relative to the updated Procrustes average. Generalized Procrustes Analysis was used to align landmark configurations and shape variation was summarized using a principal components analysis. Procrustes distances between species were calculated and resampling statistics were run to test for group differences. All subspecies demonstrate statistically different morphologies (p<0.005 for pairwise comparisons). G. b. graueri separates from other subspecies based on posterolateral morphology, with G. b. graueri demonstrating an elongated peroneal trochlea, and thus more bone superiorly than G. g. gorilla. Compared to G. b. beringei, G. b. graueri has less bone inferiorly near the tuberosity. Cuboid and posterior talar facet shapes correlate with arboreality. G. b. beringei (most terrestrial) has a flatter cuboid facet and a more transversely oriented/relatively smaller posterior talar facet than G. g. gorilla (most arboreal) and G. b. graueri represents an intermediate morphology. These differences demonstrate a relationship between calcaneal shape and locomotor behavior and suggest that G. b. graueri may load its foot differently from the other subspecies. This project was supported by NSF grant # BCS - 1824630. 
    more » « less
  5. The California floristic province is home to more than 30% of all Castilleja species across the North American wildflower genus (family Orobanchaceae). While some of the approximately 200 species are distinct morphologically, the five species composing the coastal California Castilleja species complex exhibit overlapping morphologies and geographic ranges, which poses particular challenges for species identification. To determine species, current keys employ a combination of geography, leaves, and reproductive structures. The sepals, known collectively as the calyx, are modified leaves that protect the flower and have historically been one of several important traits for diagnosing species in the complex. In this project, we utilized geometric morphometrics to quantify and describe calyx shape for three calyces per individual of five individuals across seven species, including two outgroups (n = 84). While traditional morphometrics only capture linear variation, geometric morphometrics translate more complex elements of shape. Calyx outlines were created from field scans and analyzed with Procrustes-based geometric morphometrics using three landmarks, followed by elliptic Fourier analysis. The first principal component axis across all samples explained 43.8% of variation and emphasized the depths of the calyx clefts relative to each other. Several species overlap in the morphospace while others remain distinct, which suggests limited morphological differentiation of the calyx across species and may allow for variation in successful pollination. Future analyses will quantify morphological variation in other floral organs observed both within individuals and within species to comprehensively assess morphological variation in the complex. 
    more » « less