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1. An REU/RET Project: IoT Platform and Network Data Visualization

   Toutsop, O. ( November 2021 , 2021 Fall ASEE Middle Atlantic Section Meeting)

   Internet of Things (IoT) is a connected network of devices that exchange data using different protocols. The application of IoT ranges from intelligent TVs and intelligent Refrigerators to smart Transportation. This research aims to provide students with hands-on training on how to develop an IoT platform that supports device management, connectivity, and data management. People tend to build interconnected devices without having a basic understanding of how the IoT platform backend function. Studying the Arm Pelion will help to understand how IoT devices operate under the hood. This past summer, Morgan State University has hosted undergraduate engineering students and high school STEM teachers to conduct IoT security research in the Cybersecurity Assurance & Policy (CAP) Center. The research project involved integrating various hardware sensor devices and real-time data monitoring using the Arm Pelion IoT development platform. Some of the student/teacher outcomes from the project include: 1) Learning about IoT Technology and security; 2) Programming an embedded system using Arm Mbed development board and IDE; 3 3) Developing a network of connected IoT devices using different protocols such as LWM2M, MQTT, CoAP; 4) Investigating the cybersecurity risks associated with the platform; and 5) Using data analysis and visualization to understand themore »network data and packet flow. First, the student/teacher must consider the IoT framework to understand how to address the security. The IoT framework describes the essential functions of an IoT network, breaking it down into separate layers. These layers include an application layer, middleware layer, and connectivity layer. The application layer allows the users to access the platform via a smartphone or any other dashboard. The Middleware layer represents the backend system that provides edge devices with data management, messaging, application services, and authentication. Finally, the connectivity layer includes devices that connect the user to the network, including Bluetooth or WiFi. The platform consists of several commercial IoT devices such as a smart camera, baby monitor, smart light, and other devices. We then create algorithms to classify the network data flow; to visualize the packets flow in the network and the structure of the packets data frame over time.« less
2. Rethinking Home Networks in the Ultrabroadband Era

   https://doi.org/10.1109/ICDCS.2019.00185  

   Rabinovich, Michael ; Allman, Mark ; Brennan, Stephen ; Pollack, Brian ; Xu, Junbo ( July 2019 , IEEE 39th International Conference on Distributed Computing Systems (ICDCS))

   The advent of ultrabroadband Internet connectivity brings a 2-3 orders of magnitude jump in the capacity of access networks (a.k.a. the “last mile”). Beyond mere capacity increase, this leap represents a qualitative shift in the overall Internet environment. Therefore, we argue that only by seizing the opportunity to re-think the way we structure network applications and services can we realize the full potential ultrabroadband provides. Specifically, with ultrabroadband residential networks, we have the opportunity to re-center our digital lives around our residence, similar to how our physical lives generally center around our homes. To this end, we introduce a new appliance in home networks–a “home point of presence”–that provides a variety of services to the users in the house regardless of where they are physically located and connected to the network. We illustrate the utility of this appliance by discussing a range of new services that both bring new functionality to the users and improve performance of existing applications.
3. End-user software customization by direct manipulation of tabular data

   https://doi.org/10.1145/3426428.3426914  

   Litt, Geoffrey ; Jackson, Daniel ; Millis, Tyler ; Quaye, Jessica ( January 2020 , Onward! 2020: Proceedings of the 2020 ACM SIGPLAN International Symposium on New Ideas, New Paradigms, and Reflections on Programming and Software)

   Customizing software should be as easy as using it. Unfortunately, most customization methods require users to abruptly shift from using a graphical interface to writing scripts in a programming language. We introduce data-driven customization, a new way for end users to extend software by direct manipulation without doing traditional programming. We augment existing user interfaces with a table view showing the structured data inside the application. When users edit the table, their changes are reflected in the original UI. This simple model accommodates a spreadsheet formula language and custom data-editing widgets, providing enough power to implement a variety of useful extensions. We illustrate the approach with Wildcard, a browser extension that implements data-driven customization on the web using web scraping. Through concrete examples, we show that this paradigm can support useful extensions to many real websites, and we share reflections from our experiences using the tool. Finally, we share our broader vision for data-driven customization: a future where end users have more access to the data inside their applications, and can more flexibly repurpose that data as part of everyday software usage.
4. The Temple University Digital Pathology Corpus: The Breast Tissue Subset

   https://doi.org/10.1109/SPMB52430.2021.9672275  

   Wevodau, Z. ; Doshna, B. ; Jhala, N. ; Akhtar, I. ; Obeid, I. ; Picone, J. ( December 2021 , Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB))

   Obeid, I. (Ed.)

   The Neural Engineering Data Consortium (NEDC) is developing the Temple University Digital Pathology Corpus (TUDP), an open source database of high-resolution images from scanned pathology samples [1], as part of its National Science Foundation-funded Major Research Instrumentation grant titled “MRI: High Performance Digital Pathology Using Big Data and Machine Learning” [2]. The long-term goal of this project is to release one million images. We have currently scanned over 100,000 images and are in the process of annotating breast tissue data for our first official corpus release, v1.0.0. This release contains 3,505 annotated images of breast tissue including 74 patients with cancerous diagnoses (out of a total of 296 patients). In this poster, we will present an analysis of this corpus and discuss the challenges we have faced in efficiently producing high quality annotations of breast tissue. It is well known that state of the art algorithms in machine learning require vast amounts of data. Fields such as speech recognition [3], image recognition [4] and text processing [5] are able to deliver impressive performance with complex deep learning models because they have developed large corpora to support training of extremely high-dimensional models (e.g., billions of parameters). Other fields that do notmore »have access to such data resources must rely on techniques in which existing models can be adapted to new datasets [6]. A preliminary version of this breast corpus release was tested in a pilot study using a baseline machine learning system, ResNet18 [7], that leverages several open-source Python tools. The pilot corpus was divided into three sets: train, development, and evaluation. Portions of these slides were manually annotated [1] using the nine labels in Table 1 [8] to identify five to ten examples of pathological features on each slide. Not every pathological feature is annotated, meaning excluded areas can include focuses particular to these labels that are not used for training. A summary of the number of patches within each label is given in Table 2. To maintain a balanced training set, 1,000 patches of each label were used to train the machine learning model. Throughout all sets, only annotated patches were involved in model development. The performance of this model in identifying all the patches in the evaluation set can be seen in the confusion matrix of classification accuracy in Table 3. The highest performing labels were background, 97% correct identification, and artifact, 76% correct identification. A correlation exists between labels with more than 6,000 development patches and accurate performance on the evaluation set. Additionally, these results indicated a need to further refine the annotation of invasive ductal carcinoma (“indc”), inflammation (“infl”), nonneoplastic features (“nneo”), normal (“norm”) and suspicious (“susp”). This pilot experiment motivated changes to the corpus that will be discussed in detail in this poster presentation. To increase the accuracy of the machine learning model, we modified how we addressed underperforming labels. One common source of error arose with how non-background labels were converted into patches. Large areas of background within other labels were isolated within a patch resulting in connective tissue misrepresenting a non-background label. In response, the annotation overlay margins were revised to exclude benign connective tissue in non-background labels. Corresponding patient reports and supporting immunohistochemical stains further guided annotation reviews. The microscopic diagnoses given by the primary pathologist in these reports detail the pathological findings within each tissue site, but not within each specific slide. The microscopic diagnoses informed revisions specifically targeting annotated regions classified as cancerous, ensuring that the labels “indc” and “dcis” were used only in situations where a micropathologist diagnosed it as such. Further differentiation of cancerous and precancerous labels, as well as the location of their focus on a slide, could be accomplished with supplemental immunohistochemically (IHC) stained slides. When distinguishing whether a focus is a nonneoplastic feature versus a cancerous growth, pathologists employ antigen targeting stains to the tissue in question to confirm the diagnosis. For example, a nonneoplastic feature of usual ductal hyperplasia will display diffuse staining for cytokeratin 5 (CK5) and no diffuse staining for estrogen receptor (ER), while a cancerous growth of ductal carcinoma in situ will have negative or focally positive staining for CK5 and diffuse staining for ER [9]. Many tissue samples contain cancerous and non-cancerous features with morphological overlaps that cause variability between annotators. The informative fields IHC slides provide could play an integral role in machine model pathology diagnostics. Following the revisions made on all the annotations, a second experiment was run using ResNet18. Compared to the pilot study, an increase of model prediction accuracy was seen for the labels indc, infl, nneo, norm, and null. This increase is correlated with an increase in annotated area and annotation accuracy. Model performance in identifying the suspicious label decreased by 25% due to the decrease of 57% in the total annotated area described by this label. A summary of the model performance is given in Table 4, which shows the new prediction accuracy and the absolute change in error rate compared to Table 3. The breast tissue subset we are developing includes 3,505 annotated breast pathology slides from 296 patients. The average size of a scanned SVS file is 363 MB. The annotations are stored in an XML format. A CSV version of the annotation file is also available which provides a flat, or simple, annotation that is easy for machine learning researchers to access and interface to their systems. Each patient is identified by an anonymized medical reference number. Within each patient’s directory, one or more sessions are identified, also anonymized to the first of the month in which the sample was taken. These sessions are broken into groupings of tissue taken on that date (in this case, breast tissue). A deidentified patient report stored as a flat text file is also available. Within these slides there are a total of 16,971 total annotated regions with an average of 4.84 annotations per slide. Among those annotations, 8,035 are non-cancerous (normal, background, null, and artifact,) 6,222 are carcinogenic signs (inflammation, nonneoplastic and suspicious,) and 2,714 are cancerous labels (ductal carcinoma in situ and invasive ductal carcinoma in situ.) The individual patients are split up into three sets: train, development, and evaluation. Of the 74 cancerous patients, 20 were allotted for both the development and evaluation sets, while the remain 34 were allotted for train. The remaining 222 patients were split up to preserve the overall distribution of labels within the corpus. This was done in hope of creating control sets for comparable studies. Overall, the development and evaluation sets each have 80 patients, while the training set has 136 patients. In a related component of this project, slides from the Fox Chase Cancer Center (FCCC) Biosample Repository (https://www.foxchase.org/research/facilities/genetic-research-facilities/biosample-repository -facility) are being digitized in addition to slides provided by Temple University Hospital. This data includes 18 different types of tissue including approximately 38.5% urinary tissue and 16.5% gynecological tissue. These slides and the metadata provided with them are already anonymized and include diagnoses in a spreadsheet with sample and patient ID. We plan to release over 13,000 unannotated slides from the FCCC Corpus simultaneously with v1.0.0 of TUDP. Details of this release will also be discussed in this poster. Few digitally annotated databases of pathology samples like TUDP exist due to the extensive data collection and processing required. The breast corpus subset should be released by November 2021. By December 2021 we should also release the unannotated FCCC data. We are currently annotating urinary tract data as well. We expect to release about 5,600 processed TUH slides in this subset. We have an additional 53,000 unprocessed TUH slides digitized. Corpora of this size will stimulate the development of a new generation of deep learning technology. In clinical settings where resources are limited, an assistive diagnoses model could support pathologists’ workload and even help prioritize suspected cancerous cases. ACKNOWLEDGMENTS This material is supported by the National Science Foundation under grants nos. CNS-1726188 and 1925494. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. REFERENCES [1] N. Shawki et al., “The Temple University Digital Pathology Corpus,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York City, New York, USA: Springer, 2020, pp. 67 104. https://www.springer.com/gp/book/9783030368432. [2] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning.” Major Research Instrumentation (MRI), Division of Computer and Network Systems, Award No. 1726188, January 1, 2018 – December 31, 2021. https://www. isip.piconepress.com/projects/nsf_dpath/. [3] A. Gulati et al., “Conformer: Convolution-augmented Transformer for Speech Recognition,” in Proceedings of the Annual Conference of the International Speech Communication Association (INTERSPEECH), 2020, pp. 5036-5040. https://doi.org/10.21437/interspeech.2020-3015. [4] C.-J. Wu et al., “Machine Learning at Facebook: Understanding Inference at the Edge,” in Proceedings of the IEEE International Symposium on High Performance Computer Architecture (HPCA), 2019, pp. 331–344. https://ieeexplore.ieee.org/document/8675201. [5] I. Caswell and B. Liang, “Recent Advances in Google Translate,” Google AI Blog: The latest from Google Research, 2020. [Online]. Available: https://ai.googleblog.com/2020/06/recent-advances-in-google-translate.html. [Accessed: 01-Aug-2021]. [6] V. Khalkhali, N. Shawki, V. Shah, M. Golmohammadi, I. Obeid, and J. Picone, “Low Latency Real-Time Seizure Detection Using Transfer Deep Learning,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2021, pp. 1 7. https://www.isip. piconepress.com/publications/conference_proceedings/2021/ieee_spmb/eeg_transfer_learning/. [7] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning,” Philadelphia, Pennsylvania, USA, 2020. https://www.isip.piconepress.com/publications/reports/2020/nsf/mri_dpath/. [8] I. Hunt, S. Husain, J. Simons, I. Obeid, and J. Picone, “Recent Advances in the Temple University Digital Pathology Corpus,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2019, pp. 1–4. https://ieeexplore.ieee.org/document/9037859. [9] A. P. Martinez, C. Cohen, K. Z. Hanley, and X. (Bill) Li, “Estrogen Receptor and Cytokeratin 5 Are Reliable Markers to Separate Usual Ductal Hyperplasia From Atypical Ductal Hyperplasia and Low-Grade Ductal Carcinoma In Situ,” Arch. Pathol. Lab. Med., vol. 140, no. 7, pp. 686–689, Apr. 2016. https://doi.org/10.5858/arpa.2015-0238-OA.« less
5. Hey Alexa, is this Skill Safe?: Taking a Closer Look at the Alexa Skill Ecosystem

   https://doi.org/10.14722/ndss.2021.23111  

   Lentzsch, Christopher ; Shah, Sheel Jayesh ; Andow, Benjamin ; Degeling, Martin ; Das, Anupam ; Enck, William ( February 2021 , Network and Distributed Systems Security (NDSS) Symposium2021)

   Amazon's voice-based assistant, Alexa, enables users to directly interact with various web services through natural language dialogues. It provides developers with the option to create third-party applications (known as Skills) to run on top of Alexa. While such applications ease users' interaction with smart devices and bolster a number of additional services, they also raise security and privacy concerns due to the personal setting they operate in. This paper aims to perform a systematic analysis of the Alexa skill ecosystem. We perform the first large-scale analysis of Alexa skills, obtained from seven different skill stores totaling to 90,194 unique skills. Our analysis reveals several limitations that exist in the current skill vetting process. We show that not only can a malicious user publish a skill under any arbitrary developer/company name, but she can also make backend code changes after approval to coax users into revealing unwanted information. We, next, formalize the different skill-squatting techniques and evaluate the efficacy of such techniques. We find that while certain approaches are more favorable than others, there is no substantial abuse of skill squatting in the real world. Lastly, we study the prevalence of privacy policies across different categories of skill, and more importantlymore »the policy content of skills that use the Alexa permission model to access sensitive user data. We find that around 23.3% of such skills do not fully disclose the data types associated with the permissions requested. We conclude by providing some suggestions for strengthening the overall ecosystem, and thereby enhance transparency for end-users.« less