An official website of the United States government
The cis – trans isomerization of (thio)amides was studied by DFT calculations to get the model for the higher preference for the cis conformation by guided predictive chemistry, suggesting how to select the alkyl/aryl substituents on the C/N atoms that lead to the trans isomer. Multilinear analysis, together with cross-validation analysis, helped to select the best fitting parameters to achieve the energy barriers of the cis to trans interconversion, as well as the relative stability between both isomers. Double experimental check led to the synthesis of the best trans candidate with sterically demanding t -butyl substituents, confirming the utility of predictive chemistry, bridging organic and computational chemistry.
more »
« less
Relative hydrophilicities of cis and trans formamides
Secondary formamides are widely encountered in biology and exist as mixtures of both cis and trans isomers. Here, we assess hydrophilicity differences between isomeric formamides through direct competition experiments. Formamides bearing long aliphatic chains were sequestered in a water-soluble molecular container having a hydrophobic cavity with an end open to the aqueous medium. NMR spectroscopic experiments reveal a modest preference (<1 kcal/mol) for aqueous solvation of the trans formamide terminals over the cis isomers. With diformamides, the supramolecular approach allows staging of intramolecular competition between short-lived species with subtle differences in hydrophobic properties.
more »
« less
- Award ID(s):
- 1801153
- PAR ID:
- 10157139
- Date Published:
- Journal Name:
- Proceedings of the National Academy of Sciences
- Volume:
- 116
- Issue:
- 40
- ISSN:
- 0027-8424
- Page Range / eLocation ID:
- 19815 to 19820
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract We describe convenient preparations ofN,N′‐dialkyl‐1,3‐propanedialdiminium chlorides,N,N′‐dialkyl‐1,3‐propanedialdimines, and lithiumN,N′‐dialkyl‐1,3‐propanedialdiminates in which the alkyl groups are methyl, ethyl, isopropyl, ortert‐butyl. For the dialdiminium salts, the N2C3backbone is always in thetrans‐s‐transconfiguration. Three isomers are present in solution except for thetert‐butyl compound, for which only two isomers are present; increasing the steric bulk of theN‐alkyl substituents shifts the equilibrium away from the (Z,Z) isomer in favor of the (E,Z), and (E,E) isomers. For the neutral dialdimines, crystal structures show that the methyl and isopropyl compounds adopt the (E,Z) form, whereas thetert‐butyl compound is in the (E,E) form. In aprotic solvents all four dialdimines (as well as the lithium dialdiminate salts) adoptcis‐s‐cisconformations in which there presumably is either an intramolecular hydrogen bond (or a lithium cation) between the two nitrogen atoms.more » « less
-
The structural diversity of lipids presents significant challenges for accurate identification and characterization, ne-cessitating advanced analytical tools. Among these challenges is the differentiation between cis and trans isomers of lipids, which differ only by the geometry of a carbon-carbon double bond. This study employs ozonolysis kinetics to distinguish these isomers based on the reactivity of their gas phase ions with ozone. To achieve precise differentia-tion, it is essential to use an ion adduct that enhances reactivity, thereby improving the sensitivity of the kinetic assays. We evaluated various ion types, including protonated lipids as well as lipids cationized with lithium, sodium, and potassium, using a modified quadrupole ion trap mass spectrometer. Our results demonstrate that lithium-adducted lipids exhibit the highest reaction efficiency and greatest sensitivity for distinguishing between cis and trans isomers. Subsequent analysis of cis and trans isomer mixtures of PC 18:1/18:1 (Δ9), PC 16:1/16:1 (Δ9), and PC 14:1/14:1 (Δ9) confirmed the method's robustness.more » « less
-
The photophysical properties of naturally occurring chlorophylls depend on the regioisomeric nature of the β-pyrrolic substituents. Such systems are the “gold standard” by which such effects are judged. However, simple extrapolations from what has been learned with chlorophylls may not be appropriate for other partially reduced porphyrinoids. Here we report the synthesis of a series of cis / trans -porphodilactones ( cis / trans -1) and related derivatives ( cis / trans 2–5) designed to probe the effect of regioisomeric substitution in porphyrinoids that incorporate degrees of unsaturation through the β-pyrrolic periphery that exceed those of chlorophyll. These test systems were obtained through β-pyrrolic modifications of the tetrapyrrolic core, which included reduction of β-diazalone to the corresponding dilactol moieties and 1,3-dipolar cycloadditions. In the case of cis - vs. trans -3 bearing two pyrrolidine-fused β-rings we found an unprecedented Δ Q L up to ca. 71 nm (2086 cm −1 ), where Δ Q L ( Q L means the lowest energy transfer band, also the S 0 → S 1 transition band, which is often assigned as Q y (0,0) band) refers to the transition energy difference between the corresponding cis / trans -isomers. The Δ Q L values for these and other systems reported here were found to depend on the differences in the HOMO–LUMO energy gap and to be tied to the degeneracy and energy level splitting of the FMOs, as inferred from a combination of MCD spectral studies and DFT calculations. The aromaticity, estimated from the chemical shifts of the N–H protons and supported by theoretical calculations ( e.g. , AICD plots and NICS(1) values), was found to correlate with the extent of porphyrin periphery saturation resulting from the specific β-modifications. The aromaticity proved inversely proportional to the degree to which the regioisomerism affected the photophysical properties as noted from plots of Δ Q L s in cm −1 vs. the average NICS(1) values for 1–5. Such a finding is not something that can be easily interpolated from prior work and thus reveals how aromaticity may be used to fine-tune photophysical effects in reduced porphyrinoids.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1073/pnas.1911331116
