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1. Genetic divergence and ephemeral barriers: Reconciling genetic and geological timescales within geogenomics

   Araya-Donoso, R ; Alonso-Alonso, P ; Maag, G ; Dorsey, R ; Bennett, S ; Wilder, B ; Kusumi, K ; Munguia-Vega, A ; Dolby G ( December 2021 , American Geophysical Union)

   Understanding the timescales on which different geologic processes influence genetic divergence is crucial to defining and testing geogenomic hypotheses and characterizing Earth- life evolution. To see if we can recover a genetic signal produced by a hypothetical physical barrier to gene flow, we used a geographically explicit simulation approach. We used the CDMetaPop software to simulate heritable genetic, nonadaptive, data for 20 geographically distinct populations distributed throughout the Baja California peninsula of Mexico, a landscape where a transpeninsular seaway barrier has been proposed to have isolated the southern peninsula and caused the observed latitudinal genetic divergence in over 80 terrestrial species. We simulated 10,000 generations of isolation by a barrier under two dispersal scenarios (1 km and 100 km of max. dispersal from population of origin per generation) and three DNA substitution rates (10-7, 10-8 and 10-9 nucleotide substitutions per site per generation). Our simulations indicate that a physical barrier can produce strong genetic divergence within 10,000 generations, comparable to the continuum of values observed in nature for different taxonomic groups and geological settings. We found that the generation time of the organism was by far the most important factor dictating the rate of divergence. Evaluating different generation times (0.02,more »0.2, 2 and 20 years), showed that species with longer generation times require longer periods of isolation to accumulate genetic divergence over 10k generations (~1 My). Simulating 10,000 generations of gene flow following removal of the barrier showed that the divergence signal eroded quickly, in less than 1,000 generations in every scenario, a pattern supported by theory from population genetics. These results are particularly relevant to geogenomic studies because they show that ephemeral gene flow barriers produce different magnitudes of genetic signals depending on attributes of the organism, particularly generation time, and that if reproductive isolation is not achieved during isolation, then the evolutionary signal of an ephemeral barrier may not develop. This work helps guide the limits of detectability when integrating genomic data with geological and climatic processes.« less
2. Expedition 374 Scientific Prospectus: Ross Sea West Antarctic Ice Sheet History

   https://doi.org/10.14379/iodp.sp.374.2017  

   McKay, R.M. ; De Santis, L. ; Kulhanek, D.K. ( September 2017 , Scientific prospectus)

   Observations from the past several decades indicate that the Southern Ocean is warming significantly and that Southern Hemisphere westerly winds have migrated southward and strengthened due to increasing atmospheric CO2 concentrations and/or ozone depletion. These changes have been linked to thinning of Antarctic ice shelves and marine terminating glaciers. Results from geologic drilling on Antarctica’s continental margins show late Neogene marine-based ice sheet variability, and numerical models indicate a fundamental role for oceanic heat in controlling this variability over at least the past 20 My. Although evidence for past ice sheet variability has been observed in marginal settings, sedimentological sequences from the outer continental shelf are required to evaluate the extent of past ice sheet variability and the role of oceanic heat flux in controlling ice sheet mass balance. International Ocean Discovery Program (IODP) Expedition 374 proposes a latitudinal and depth transect of six drill sites from the outer continental shelf and rise in the eastern Ross Sea to resolve the relationship between climatic/oceanic change and West Antarctic Ice Sheet (WAIS) evolution through the Neogene and Quaternary. This location was selected because numerical ice sheet models indicate that it is highly sensitive to changes in ocean heat flux and seamore »level. The proposed drilling is designed for optimal data-model integration, which will enable an improved understanding of the sensitivity of Antarctic Ice Sheet mass balance during warmer-than-present climates (e.g., the early Pliocene and middle Miocene). Additionally, the proposed transect links ice-proximal records from the inner Ross Sea continental shelf (e.g., ANDRILL sites) to deepwater Southwest Pacific drilling sites/targets to obtain an ice-proximal to far-field view of Neogene climate and Antarctic cryosphere evolution. The proposed scientific objectives directly address Ocean and Climate Challenges 1 and 2 of the 2013–2023 IODP Science Plan. Drilling Neogene and Quaternary strata from the Ross Sea continental shelf-to-rise sedimentary sequence is designed to achieve five scientific objectives: 1. Evaluate the contribution of West Antarctica to far-field ice volume and sea level estimates. 2. Reconstruct ice-proximal atmospheric and oceanic temperatures to identify past polar amplification and assess its forcings/feedbacks. 3. Assess the role of oceanic forcing (e.g., sea level and temperature) on Antarctic Ice Sheet stability/instability. 4. Identify the sensitivity of the AIS to Earth’s orbital configuration under a variety of climate boundary conditions. 5. Reconstruct eastern Ross Sea bathymetry to examine relationships between seafloor geometry, ice sheet stability/instability, and global climate. To achieve these objectives, we will (1) use data and models to reconcile intervals of maximum Neogene and Quaternary Antarctic ice advance with far-field records of eustatic sea level change; (2) reconstruct past changes in oceanic and atmospheric temperatures using a multiproxy approach; (3) reconstruct Neogene and Quaternary ice margin fluctuations in datable marine continental slope and rise records and correlate these records to existing inner continental shelf records; (4) examine relationships among WAIS stability/instability, Earth’s orbital configuration, oceanic temperature and circulation, and atmospheric pCO2; and (5) constrain the timing of Ross Sea continental shelf overdeepening and assess its impact on Neogene and Quaternary ice dynamics.« less
3. Spintharus flavidus in the Caribbean—a 30 million year biogeographical history and radiation of a ‘widespread species’

   https://doi.org/10.7717/peerj.1422  

   Dziki, Austin ; Binford, Greta J. ; Coddington, Jonathan A. ; Agnarsson, Ingi ( November 2015 , PeerJ)

   The Caribbean island biota is characterized by high levels of endemism, the result of an interplay between colonization opportunities on islands and effective oceanic barriers among them. A relatively small percentage of the biota is represented by ‘widespread species,’ presumably taxa for which oceanic barriers are ineffective. Few studies have explored in detail the genetic structure of widespread Caribbean taxa. The cobweb spiderSpintharus flavidusHentz, 1850 (Theridiidae) is one of two describedSpintharusspecies and is unique in being widely distributed from northern N. America to Brazil and throughout the Caribbean. As a taxonomic hypothesis,Spintharus “flavidus”predicts maintenance of gene flow among Caribbean islands, a prediction that seems contradicted by knownS. flavidusbiology, which suggests limited dispersal ability. As part of an extensive survey of Caribbean arachnids (project CarBio), we conducted the first molecular phylogenetic analysis ofS. flaviduswith the primary goal of testing the ‘widespread species’ hypothesis. Our results, while limited to three molecular loci, reject the hypothesis of a single widespread species. Instead this lineage seems to represent a radiation with at least 16 species in the Caribbean region. Nearly all are short range endemics with several distinct mainland groups and others are single island endemics. While limited taxon sampling, with a single specimenmore »from S. America, constrains what we can infer about the biogeographical history of the lineage, clear patterns still emerge. Consistent with limited overwater dispersal, we find evidence for a single colonization of the Caribbean about 30 million years ago, coinciding with the timing of the GAARLandia landbridge hypothesis. In sum,S. “flavidus”is not a single species capable of frequent overwater dispersal, but rather a 30 my old radiation of single island endemics that provides preliminary support for a complex and contested geological hypothesis.

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4. Expedition 374 Preliminary Report: Ross Sea West Antarctic Ice Sheet History

   https://doi.org/10.14379/iodp.pr.374.2018  

   McKay, R.M. ; De Santis, L. ; Kulhanek, D.K. ( May 2018 , Preliminary report)

   The marine-based West Antarctic Ice Sheet (WAIS) is currently retreating due to shifting wind-driven oceanic currents that transport warm waters toward the ice margin, resulting in ice shelf thinning and accelerated mass loss of the WAIS. Previous results from geologic drilling on Antarctica’s continental margins show significant variability in marine-based ice sheet extent during the late Neogene and Quaternary. Numerical models indicate a fundamental role for oceanic heat in controlling this variability over at least the past 20 My. Although evidence for past ice sheet variability has been collected in marginal settings, sedimentologic sequences from the outer continental shelf are required to evaluate the extent of past ice sheet variability and the associated oceanic forcings and feedbacks. International Ocean Discovery Program Expedition 374 drilled a latitudinal and depth transect of five drill sites from the outer continental shelf to rise in the eastern Ross Sea to resolve the relationship between climatic and oceanic change and WAIS evolution through the Neogene and Quaternary. This location was selected because numerical ice sheet models indicate that this sector of Antarctica is highly sensitive to changes in ocean heat flux. The expedition was designed for optimal data-model integration and will enable an improved understandingmore »of the sensitivity of Antarctic Ice Sheet (AIS) mass balance during warmer-than-present climates (e.g., the Pleistocene “super interglacials,” the mid-Pliocene, and the late early to middle Miocene). The principal goals of Expedition 374 were to • Evaluate the contribution of West Antarctica to far-field ice volume and sea level estimates; • Reconstruct ice-proximal atmospheric and oceanic temperatures to identify past polar amplification and assess its forcings and feedbacks; • Assess the role of oceanic forcing (e.g., sea level and temperature) on AIS stability/instability; • Identify the sensitivity of the AIS to Earth’s orbital configuration under a variety of climate boundary conditions; and • Reconstruct eastern Ross Sea paleobathymetry to examine relationships between seafloor geometry, ice sheet stability/instability, and global climate. To achieve these objectives, we will • Use data and models to reconcile intervals of maximum Neogene and Quaternary Antarctic ice advance with far-field records of eustatic sea level change; • Reconstruct past changes in oceanic and atmospheric temperatures using a multiproxy approach; • Reconstruct Neogene and Quaternary sea ice margin fluctuations in datable marine continental slope and rise records and correlate these records to existing inner continental shelf records; • Examine relationships among WAIS stability/instability, Earth’s orbital configuration, oceanic temperature and circulation, and atmospheric pCO2; and • Constrain the timing of Ross Sea continental shelf overdeepening and assess its impact on Neogene and Quaternary ice dynamics. Expedition 374 was carried out from January to March 2018, departing from Lyttelton, New Zealand. We recovered 1292.70 m of high-quality cores from five sites spanning the early Miocene to late Quaternary. Three sites were cored on the continental shelf (Sites U1521, U1522, and U1523). At Site U1521, we cored a 650 m thick sequence of interbedded diamictite, mudstone, and diatomite, penetrating the Ross Sea seismic Unconformity RSU4. The depositional reconstructions of past glacial and open-marine conditions at this site will provide unprecedented insight into environmental change on the Antarctic continental shelf during the early and middle Miocene. At Site U1522, we cored a discontinuous upper Miocene to Pleistocene sequence of glacial and glaciomarine strata from the outer shelf, with the primary objective to penetrate and date seismic Unconformity RSU3, which is interpreted to represent the first major continental shelf–wide expansion and coalescing of marine-based ice streams from both East and West Antarctica. At Site U1523, we cored a sediment drift located beneath the westerly flowing Antarctic Slope Current (ASC). Cores from this site will provide a record of the changing vigor of the ASC through time. Such a reconstruction will enable testing of the hypothesis that changes in the vigor of the ASC represent a key control on regulating heat flux onto the continental shelf, resulting in the ASC playing a fundamental role in ice sheet mass balance. We also cored two sites on the continental slope and rise. At Site U1524, we cored a Plio–Pleistocene sedimentary sequence on the continental rise on the levee of the Hillary Canyon, which is one of the largest conduits of Antarctic Bottom Water delivery from the Antarctic continental shelf into the abyssal ocean. Drilling at Site U1524 was intended to penetrate into middle Miocene and older strata but was initially interrupted by drifting sea ice that forced us to abandon coring in Hole U1524A at 399.5 m drilling depth below seafloor (DSF). We moved to a nearby alternate site on the continental slope (U1525) to core a single hole with a record complementary to the upper part of the section recovered at Site U1524. We returned to Site U1524 3 days later, after the sea ice cleared. We then cored Hole U1524C with the rotary core barrel with the intention of reaching the target depth of 1000 m DSF. However, we were forced to terminate Hole U1524C at 441.9 m DSF due to a mechanical failure with the vessel that resulted in termination of all drilling operations and a return to Lyttelton 16 days earlier than scheduled. The loss of 39% of our operational days significantly impacted our ability to achieve all Expedition 374 objectives as originally planned. In particular, we were not able to obtain the deeper time record of the middle Miocene on the continental rise or abyssal sequences that would have provided a continuous and contemporaneous archive to the high-quality (but discontinuous) record from Site U1521 on the continental shelf. The mechanical failure also meant we could not recover sediment cores from proposed Site RSCR-19A, which was targeted to obtain a high-fidelity, continuous record of upper Neogene and Quaternary pelagic/hemipelagic sedimentation. Despite our failure to recover a shelf-to-rise transect for the Miocene, a continental shelf-to-rise transect for the Pliocene to Pleistocene interval is possible through comparison of the high-quality records from Site U1522 with those from Site U1525 and legacy cores from the Antarctic Geological Drilling Project (ANDRILL).« less
5. Expedition 393 Preliminary Report: South Atlantic Transect 2

   Teagle, D.A.H. ; Reece, J. ; Coggon, R.M. ; Sylvan, J.B. ; Christeson, G.L. ; Williams, T.J. ; Estes, E.R. ( January 2023 , Preliminary report)

   The South Atlantic Transect (SAT) is a multidisciplinary scientific ocean drilling experiment designed to investigate the evolution of the oceanic crust and overlying sediments across the western flank of the Mid-Atlantic Ridge. This project comprises four International Ocean Discovery Program expeditions: fully staffed Expeditions 390 and 393 (April–August 2022) built on engineering preparations during Expeditions 390C and 395E that took place without science parties during the height of the Coronavirus Disease 2019 (COVID-19) pandemic. Through operations along a crustal flow line at ~31°S, the SAT recovered complete sedimentary sections and the upper ~40–340 m of the underlying ocean crust formed at a slow to intermediate spreading rate at the Mid-Atlantic Ridge over the past ~61 My. The sediments along this transect were originally spot cored more than 50 y ago during Deep Sea Drilling Project Leg 3 (December 1968–January 1969) to help verify the theories of seafloor spreading and plate tectonics. The SAT expeditions targeted six primary sites on 7, 15, 31, 49, and 61 Ma ocean crust that fill critical gaps in our sampling of intact in situ ocean crust with regards to crustal age, spreading rate, and sediment thickness. Drilling these sites was required to investigate the history,more »duration, and intensity of the low-temperature hydrothermal interactions between the aging ocean crust and the evolving South Atlantic Ocean. This knowledge will improve the quantification of past hydrothermal contributions to global biogeochemical cycles and help develop a predictive understanding of the impacts of variable hydrothermal processes and exchanges. Samples from the transect of the previously unexplored sediment- and basalt-hosted deep biosphere beneath the South Atlantic Gyre are essential to refine global biomass estimates and examine microbial ecosystems’ responses to variable conditions in a low-energy gyre and aging ocean crust. The transect is located near World Ocean Circulation Experiment Line A10, which provides a baseline for records of carbonate chemistry and deepwater mass properties across the western South Atlantic through key Cenozoic intervals of elevated atmospheric CO2 and rapid climate change. Reconstruction of the history of the deep western boundary current and deepwater formation in the Atlantic basins will yield crucial data to test hypotheses regarding the role of evolving thermohaline circulation patterns in climate change and the effects of tectonic gateways and climate on ocean acidification. During engineering Expeditions 390C and 395E, a single hole was cored through the sediment cover and into the uppermost rocks of the ocean crust with the advanced piston corer (APC) and extended core barrel (XCB) systems at five of the six primary proposed SAT sites. Reentry systems with casing were then installed either into basement or within 10 m of basement at each of those five sites. Expedition 390 (7 April–7 June 2022) conducted operations at three of the SAT sites, recovering 700 m of core (77%) over 30.3 days of on-site operations. Sediment coring, basement coring, and wireline logging were conducted at two sites on 61 Ma crust (Sites U1556 and U1557), and sediment coring was completed at the 7 Ma Site U1559. Expedition 393 operated at four sites, drilling in 12 holes to complete this initial phase of the SAT. Complete sedimentary sections were collected at Sites U1558, U1583, and U1560 on 49, 31, and 15 Ma crust, respectively, and together with 257.7 m of sediments cored during earlier operations, more than 600 m of sediments was characterized. The uppermost ocean crust was drilled at Sites U1558, U1560, and U1583 with good penetration (~130 to ~204 meters subbasement), but at the youngest ~7 Ma Site U1559, only ~43 m of basement penetration was achieved in this initial attempt. Geophysical wireline logs were aquired at Sites U1583 and U1560. Expeditions 390 and 393 established legacy sites available for future deepening and downhole basement hydrothermal and microbiological experiments at Sites U1557, U1560, and U1559 on 61, 15, and 7 Ma crust, respectively.« less