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1. Neither larval duration nor dispersal distance predict spatial genetic diversity in planktonic dispersing species

   https://doi.org/10.3354/meps14419  

   Esser, EA; Pringle, JM; Byers, JE (October 2023, Marine Ecology Progress Series)

   The increase in genetic distance between marine individuals or populations with increasing distance has often been assumed to be influenced by dispersal distance. In turn, dispersal distance has often been assumed to correlate strongly with pelagic larval duration (PLD). We examined the consistency of these assumptions in species with long planktonic durations. Reviewing multiple marine species, Selkoe & Toonen (2011; Mar Ecol Prog Ser 436:291-305) demonstrated significant fit of a species’ PLD with metrics of genetic distance between sampling sites. However, for long dispersers (PLD >10 d) whose dispersal is more influenced by ocean currents, the fit of PLD and genetic connectivity metrics was not significant. We tested if using realistic ocean currents to determine simulated dispersal distances would produce an improved proxy for larval dispersal that correlates more strongly with genetic connectivity metrics. We estimated the dispersal distance of propagules for locations in the genetic studies compiled by Selkoe and Toonen with a global ocean model (Mercator, 1/12° resolution). The model-derived estimates of dispersal distance did not correlate better than PLD against the genetic diversity metrics globalF_STkm^-1and isolation-by-distance (IBD) slope. We explored 2 explanations: (1) our ocean circulation-based dispersal distance estimates are too simple to produce biologically meaningful improvement over PLD, and (2) IBD slope is not a powerful predictor of variation in dispersal distance between species with long PLD. Exploring these explanations suggests directions for future research which will enable better quantitative understanding of genetic diversity and its spatial distribution in coastal marine organisms. 

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2. Where to draw the line? Expanding the delineation of conservation units to highly mobile taxa

   https://doi.org/10.1093/jhered/esad011  

   Turbek, Sheela P.; Funk, W. Chris; Ruegg, Kristen C.; Murphy, ed., William (February 2023, Journal of Heredity)

   Abstract Conservation units (CUs) are an essential tool for maximizing evolutionary potential and prioritizing areas across a species’ range for protection when implementing conservation and management measures. However, current workflows for identifying CUs on the basis of neutral and adaptive genomic variation largely ignore information contained in patterns of isolation by distance (IBD), frequently the primary signal of population structure in highly mobile taxa, such as birds, bats, and marine organisms with pelagic larval stages. While individuals located on either end of a species’ distribution may exhibit clear genetic, phenotypic, and ecological differences, IBD produces subtle changes in allele frequencies across space, making it difficult to draw clear boundaries for conservation purposes in the absence of discrete population structure. Here, we highlight potential pitfalls that arise when applying common methods for delineating CUs to continuously distributed organisms and review existing methods for detecting subtle breakpoints in patterns of IBD that can indicate barriers to gene flow in highly mobile taxa. In addition, we propose a new framework for identifying CUs in all organisms, including those characterized by continuous genomic differentiation, and suggest several possible ways to harness the information contained in patterns of IBD to guide conservation and management decisions. 

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3. Restricted Dispersal and Phenotypic Response to Water Depth in a Foundation Seagrass

   https://doi.org/10.1111/mec.17565  

   Sotka, Erik E; Hughes, A Randall; Hanley, Torrance C; Hays, Cynthia G (December 2024, Molecular Ecology)

   ABSTRACT Species conservation and management benefit from precise understanding of natural patterns of dispersal and genetic variation. Using recent advances in indirect genetic methods applied to both adult plants and dispersed seeds, we find that the mean seed dispersal in a threatened marine foundation plant (the eelgrassZostera marina) is approximately 100–200 m. This distance is surprisingly more similar to that of wind‐dispersed terrestrial seeds (~10s to 100s of meters) than the passive dispersal of marine propagules via currents (~10s to 100s of kilometres). Because nearshore marine plants likeZosteraare commonly distributed across strong selective gradients driven by bathymetry (depth) even within these restricted spatial scales, seeds are capable of dispersing to novel water depths and experiencing profound shifts in light availability, temperature and wave exposure. We documented strong phenotypic variation and genome‐wide differentiation among plants separated by approximately the spatial scale of mean realised dispersal. This result suggests genetic isolation by environment in response to depth‐related environmental gradients as one plausible explanation for this pattern. The ratio of effective to census size (or Ne/Nc) approximated 0.1%, indicating that a fraction of existing plants provides the genetic variation to allow adaptation to environmental change. Our results suggest that successful conservation of seagrass meadows that can adapt to microspatial and temporal variation in environmental conditions will be low without direct and persistent intervention using large numbers of individuals or a targeted selection of genotypes. 

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4. Considerable genetic diversity and structure despite narrow endemism and limited ecological specialization in the Hayden's ringlet, Coenonympha haydenii

   https://doi.org/10.1111/mec.17310  

   Springer, Amy L.; Gompert, Zachariah (March 2024, Molecular Ecology)

   Abstract Understanding the processes that underlie the development of population genetic structure is central to the study of evolution. Patterns of genetic structure, in turn, can reveal signatures of isolation by distance (IBD), barriers to gene flow, or even the genesis of speciation. However, it is unclear how severe range restriction might impact the processes that dominate the development of genetic structure. In narrow endemic species, is population structure likely to be adaptive in nature, or rather the result of genetic drift? In this study, we investigated patterns of genetic diversity and structure in the narrow endemic Hayden's ringlet butterfly. Specifically, we asked to what degree genetic structure in the Hayden's ringlet can be explained by IBD, isolation by resistance (IBR) (in the form of geographic or ecological barriers to migration between populations), and isolation by environment (in the form of differences in host plant availability and preference). We employed a genotyping‐by‐sequencing (GBS) approach coupled with host preference assays, Bayesian modelling, and population genomic analyses to answer these questions. Our results suggest that despite their restricted range, levels of genetic diversity in the Hayden's ringlet are comparable to those seen in more widespread butterfly species. Hayden's ringlets showed a strong preference for feeding on grasses relative to sedges, but neither larval preference nor potential host availability at sampling sites correlated with genetic structure. We conclude that geography, in the form of IBR and simple IBD, was the major driver of contemporary patterns of differentiation in this narrow endemic species. 

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5. Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation

   https://doi.org/10.1111/mec.15829  

   Thia, Joshua A.; McGuigan, Katrina; Liggins, Libby; Figueira, Will F.; Bird, Christopher E.; Mather, Andrew; Evans, Jennifer L.; Riginos, Cynthia (January 2021, Molecular Ecology)

   null (Ed.)

   Interactions among selection, gene flow, and drift affect the trajectory of adaptive evolution. In natural populations, the direction and magnitude of these processes can be variable across different spatial, temporal, or ontogenetic scales. Consequently, variability in evolutionary processes affects the predictability or stochasticity of microevolutionary outcomes. We studied an intertidal fish, Bathygobius cocosensis (Bleeker, 1854), to understand how space, time, and life stage structure genetic and phenotypic variation in a species with potentially extensive dispersal and a complex life cycle (larval dispersal preceding benthic recruitment). We sampled juvenile and adult life stages, at three sites, over three years. Genome-wide SNPs uncovered a pattern of chaotic genetic patchiness, that is, weak-but-significant patchy spatial genetic structure that was variable through time and between life stages. Outlier locus analyses suggested that targets of spatially divergent selection were mostly temporally variable, though a significant number of spatial outlier loci were shared between life stages. Head shape, a putatively ecologically responsive (adaptive) phenotype in B. cocosensis also exhibited high temporal variability within sites. However, consistent spatial relationships between sites indicated that environmental similarities among sites may generate predictable phenotype distributions across space. Our study highlights the complex microevolutionary dynamics of marine systems, where consideration of multiple ecological dimensions can reveal both predictable and stochastic patterns in the distributions of genetic and phenotypic variation. Such considerations probably apply to species that possess short, complex life cycles, have large dispersal potential and fecundities, and that inhabit heterogeneous environments. 

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