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1. A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

   https://doi.org/10.1093/jhered/esab002  

   Heaton, Michael P; Smith, Timothy P; Bickhart, Derek M; Vander Ley, Brian L; Kuehn, Larry A; Oppenheimer, Jonas; Shafer, Wade R; Schuetze, Fred T; Stroud, Brad; McClure, Jennifer C; et al (January 2021, Journal of Heredity)

   Koepfli, Klaus-Peter (Ed.)

   Abstract Genomics research has relied principally on the establishment and curation of a reference genome for the species. However, it is increasingly recognized that a single reference genome cannot fully describe the extent of genetic variation within many widely distributed species. Pangenome representations are based on high-quality genome assemblies of multiple individuals and intended to represent the broadest possible diversity within a species. A Bovine Pangenome Consortium (BPC) has recently been established to begin assembling genomes from more than 600 recognized breeds of cattle, together with other related species to provide information on ancestral alleles and haplotypes. Previously reported de novo genome assemblies for Angus, Brahman, Hereford, and Highland breeds of cattle are part of the initial BPC effort. The present report describes a complete single haplotype assembly at chromosome-scale for a fullblood Simmental cow from an F1 bison–cattle hybrid fetus by trio binning. Simmental cattle, also known as Fleckvieh due to their red and white spots, originated in central Europe in the 1830s as a triple-purpose breed selected for draught, meat, and dairy production. There are over 50 million Simmental cattle in the world, known today for their fast growth and beef yields. This assembly (ARS_Simm1.0) is similar in length to the other bovine assemblies at 2.86 Gb, with a scaffold N50 of 102 Mb (max scaffold 156.8 Mb) and meets or exceeds the continuity of the best Bos taurus reference assemblies to date. 

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2. Reintroducing bison results in long-running and resilient increases in grassland diversity

   https://doi.org/10.1073/pnas.2210433119  

   Ratajczak, Zak; Collins, Scott L.; Blair, John M.; Koerner, Sally E.; Louthan, Allison M.; Smith, Melinda D.; Taylor, Jeffrey H.; Nippert, Jesse B. (September 2022, Proceedings of the National Academy of Sciences)

   The widespread extirpation of megafauna may have destabilized ecosystems and altered biodiversity globally. Most megafauna extinctions occurred before the modern record, leaving it unclear how their loss impacts current biodiversity. We report the long-term effects of reintroducing plains bison ( Bison bison ) in a tallgrass prairie versus two land uses that commonly occur in many North American grasslands: 1) no grazing and 2) intensive growing-season grazing by domesticated cattle ( Bos taurus ). Compared to ungrazed areas, reintroducing bison increased native plant species richness by 103% at local scales (10 m 2 ) and 86% at the catchment scale. Gains in richness continued for 29 y and were resilient to the most extreme drought in four decades. These gains are now among the largest recorded increases in species richness due to grazing in grasslands globally. Grazing by domestic cattle also increased native plant species richness, but by less than half as much as bison. This study indicates that some ecosystems maintain a latent potential for increased native plant species richness following the reintroduction of native herbivores, which was unmatched by domesticated grazers. Native-grazer gains in richness were resilient to an extreme drought, a pressure likely to become more common under future global environmental change. 

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3. Bison and cattle grazing increase soil nitrogen cycling in a tallgrass prairie ecosystem

   https://doi.org/10.1007/s10533-024-01144-0  

   Anguiano, Nicholas Vega; Freeman, Kiona M.; Figge, Janaye D.; Hawkins, Jaide H.; Zeglin, Lydia H. (April 2024, Biogeochemistry)

   Abstract Nitrogen (N) is a necessary element of soil fertility and a limiting nutrient in tallgrass prairie but grazers like bison and cattle can also recycle N. Bison and cattle impact the nitrogen (N) cycle by digesting forage that is consumed, and recycled back to the soil in a more available forms stimulating soil microbial N cycling activities. Yet we do not know how both grazers comparatively affect N cycling in tallgrass prairie. Thus, we investigated if bison and cattle had similar impacts on N cycling in annually burned tallgrass prairie relative to ungrazed conditions over a 3-year period (2020–2022) at the Konza Prairie Biological Station. We examined: soil pH, soil water content, mineralized N, nitrification potential, denitrification potential and extracellular enzyme assays. Interannual variability in precipitation controlled soil water and N cycling microbial activities but grazing effects had a stronger influence on N cycling. We found significant differences and increased soil pH, nitrification and denitrification potential and less N limitation in bison vs cattle grazed soils where bison grazed soils exhibited faster N cycling. Differences between the grazers may be attributed to the different management of bison and cattle as both can impact N cycling. Overall, these data provide some evidence that bison and cattle affect N cycling differently at this study site, and improve the ecological understanding of grazer impacts on N cycling dynamics within the tallgrass prairie ecosystem. 

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4. Reintroduced bison diet changes throughout the season in restored prairie

   https://doi.org/10.1111/rec.13161  

   Blackburn, Ryan C; Barber, Nicholas A; Jones, Holly P (April 2021, Restoration Ecology)

   Grazing as a management tool is often intended to alter plant community dynamics through preferential foraging. Bison diet in the western United States has been well studied, especially in short and mixed grass remnant prairies. However, there is little known about what bison consume in restored and tallgrass prairies. As bison reintroductions are used more commonly in eastern tallgrass prairies, it is important to understand their diet to predict future impacts on prairie plant communities. This study aims to understand bison diet across different seasons, and asks whether diet differs among male and female, and differently aged bison. We used stable isotope analysis to quantify δ¹³C and δ¹⁵N in plants and used a Bayesian isotope mixing model to estimate bison diet. We found bulls relied more heavily on C₄plants and wetland plants than cows, which relied more heavily on forbs, but no differences in diet between ages. Our analysis shows that bison primarily grazed on C₄grasses throughout the late spring and summer. However, bison foraged more on wetland species and forbs in the late summer and fall. This change in diet could have implications for wetland species and habitats, through dung inputs and trampling. The relatively high reliance on forbs for nearly one‐third of bison diet could mean intended impacts of reintroduced bison such as increased plant diversity through preferential grazing on grasses could be dampened. Managers reintroducing bison to restored prairie ecosystems should ensure adequate wetland and forb species, in addition to a mix of grasses. 

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5. Native megafauna ( Bison bison ) act as a surprising inhibitor of cedar tree expansion in a Great Plains grassland

   https://doi.org/10.1002/eap.70108  

   Noble, Sidney; Ratajczak, Zak; Noble, Brynn (October 2025, Ecological Applications)

   Abstract In the Central Great Plains of North America, fire suppression is causing transitions from grasslands to shrublands and woodlands. This woody encroachment alters plant community composition, decreases grassland biodiversity, undermines key ecosystem services, and is difficult to reverse. How native grazers affect woody encroachment is largely unknown, especially compared to domesticated grazers. Bison were once the most widespread megafauna in North America and are typically categorized as grazers, with negative effects on grasses that indirectly benefit woody plants. However, bison can negatively impact woody plants through occasional browsing and mechanical disturbance. This study reports on a 30‐year experiment at Konza Prairie Biological Station, a mesic grassland in the Central Great Plains of North America, under fire suppression and experimental presence/absence of bison. Based on remote sensing, deciduous tree canopy cover was lower with bison (6% grazed vs. 16% ungrazed). Shrub land cover showed no difference (42% grazed vs. 41% ungrazed), while herbaceous land cover was higher with bison (51% grazed vs. 40% ungrazed). Evergreen tree canopy cover (Juniperus virginianaL.), which decreases biodiversity and increases wildfire risk, was approximately 0% with bison compared to 4% without bison. In the survival trial ofJ. virginianaseedlings, we found a 40% overwinter mortality with bison, compared to 5% mortality without bison. Compared to ungrazed areas, native plant species richness was 97% and 38% higher in bison‐grazed uplands and lowlands, respectively. Species evenness and Shannon's index were higher in the bison treatment in uplands, but not in lowlands. Bison affected community composition, resulting in higher cover of short grass species and lower tree cover. While grazers are generally assumed to favor woody plants, we found that bison had the opposite effect at low fire frequencies. We argue that the large size of bison and their behaviors account for this pattern, including trampling, horning, and occasional browsing. From a conservation perspective, bison might hamper tree expansion and increase plant diversity in tallgrass prairies and similar grasslands. 

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