The special purpose sorting operation, context directed swap (CDS), is an example of the block interchange sorting operation studied in prior work on permutation sorting. CDShas been postulated to model certain molecular sorting events that occur in the genome maintenance program of some species of ciliates. We investigate the mathematical structure of permutations not sortable by the CDSsorting operation. In particular, we present substantial progress towards quantifying permutations with a given strategic pile size, which can be understood as a measure of CDSnon-sortability. Our main results include formulas for the number of permutations in [Formula: see text] with maximum size strategic pile. More generally, we derive a formula for the number of permutations in [Formula: see text] with strategic pile size [Formula: see text], in addition to an algorithm for computing certain coefficients of this formula, which we call merge numbers.
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Symbol Separation in Double Occurrence Words
A double occurrence word (DOW) is a word in which every symbol appears exactly twice. We define the symbol separation of a DOW [Formula: see text] to be the number of letters between the two copies of a symbol, and the separation of [Formula: see text] to be the sum of separations over all symbols in [Formula: see text]. We then analyze relationship among size, reducibility and separation of DOWs. Specifically, we provide tight bounds of separations of DOWs with a given size and characterize the words that attain those bounds. We show that all separation numbers within the bounds can be realized. We present recursive formulas for counting the numbers of DOWs with a given separation under various restrictions, such as the number of irreducible factors. These formulas can be obtained by inductive construction of all DOWs with the given separation.
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- PAR ID:
- 10254017
- Date Published:
- Journal Name:
- International Journal of Foundations of Computer Science
- Volume:
- 31
- Issue:
- 07
- ISSN:
- 0129-0541
- Page Range / eLocation ID:
- 915 to 928
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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