Abstract We analyze networks of functional correlations between brain regions to identify changes in their structure caused by Attention Deficit Hyperactivity Disorder (adhd). We express the task for finding changes as a network anomaly detection problem on temporal networks. We propose the use of a curvature measure based on the Forman–Ricci curvature, which expresses higher-order correlations among two connected nodes. Our theoretical result on comparing this Forman–Ricci curvature with another well-known notion of network curvature, namely the Ollivier–Ricci curvature, lends further justification to the assertions that these two notions of network curvatures are not well correlated and therefore one of these curvature measures cannot be used as an universal substitute for the other measure. Our experimental results indicate nine critical edges whose curvature differs dramatically in brains ofadhdpatients compared to healthy brains. The importance of these edges is supported by existing neuroscience evidence. We demonstrate that comparative analysis of curvature identifies changes that more traditional approaches, for example analysis of edge weights, would not be able to identify.
more »
« less
A Review of and Some Results for Ollivier–Ricci Network Curvature
Characterizing topological properties and anomalous behaviors of higher-dimensional topological spaces via notions of curvatures is by now quite common in mainstream physics and mathematics, and it is therefore natural to try to extend these notions from the non-network domains in a suitable way to the network science domain. In this article we discuss one such extension, namely Ollivier’s discretization of Ricci curvature. We first motivate, define and illustrate the Ollivier–Ricci Curvature. In the next section we provide some “not-previously-published” bounds on the exact and approximate computation of the curvature measure. In the penultimate section we review a method based on the linear sketching technique for efficient approximate computation of the Ollivier–Ricci network curvature. Finally in the last section we provide concluding remarks with pointers for further reading.
more »
« less
- Award ID(s):
- 1814931
- PAR ID:
- 10273231
- Date Published:
- Journal Name:
- Mathematics
- Volume:
- 8
- Issue:
- 9
- ISSN:
- 2227-7390
- Page Range / eLocation ID:
- 1416
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Curvature is a fundamental geometric characteristic of smooth spaces. In recent years different notions of curvature have been developed for combinatorial discrete objects such as graphs. However, the connections between such discrete notions of curvature and their smooth counterparts remain lurking and moot. In particular, it is not rigorously known if any notion of graph curvature converges to any traditional notion of curvature of smooth space. Here we prove that in proper settings the Ollivier–Ricci curvature of random geometric graphs in Riemannian manifolds converges to the Ricci curvature of the manifold. This is the first rigorous result linking curvature of random graphs to curvature of smooth spaces. Our results hold for different notions of graph distances, including the rescaled shortest path distance, and for different graph densities. Here the scaling of the average degree, as a function of the graph size, can range from nearly logarithmic to nearly linear.more » « less
-
Abstract Cellular biological networks represent the molecular interactions that shape function of living cells. Uncovering the organization of a biological network requires efficient and accurate algorithms to determine the components, termed communities, underlying specific processes. Detecting functional communities is challenging because reconstructed biological networks are always incomplete due to technical bias and biological complexity, and the evaluation of putative communities is further complicated by a lack of known ground truth. To address these challenges, we developed a geometric-based detection framework based on Ollivier-Ricci curvature to exploit information about network topology to perform community detection from partially observed biological networks. We further improved this approach by integrating knowledge of gene function, termed side information, into the Ollivier-Ricci curvature algorithm to aid in community detection. This approach identified essential conserved and varied biological communities from partially observedArabidopsisprotein interaction datasets better than the previously used methods. We show that Ollivier-Ricci curvature with side information identified an expanded auxin community to include an important protein stability complex, the Cop9 signalosome, consistent with previous reported links to auxin response and root development. The results show that community detection based on Ollivier-Ricci curvature with side information can uncover novel components and novel communities in biological networks, providing novel insight into the organization and function of complex networks.more » « less
-
In this work, we propose to utilize discrete graph Ricci flow to alter network entropy through feedback control. Given such feedback input can “reverse” entropic changes, we adapt the moniker of Maxwell’s Demon to motivate our approach. In particular, it has been recently shown that Ricci curvature from geometry is intrinsically connected to Boltzmann entropy as well as functional robustness of networks or the ability to maintain functionality in the presence of random fluctuations. From this, the discrete Ricci flow provides a natural avenue to “rewire” a particular network’s underlying geometry to improve throughout and resilience. Due to the real-world setting for which one may be interested in imposing nonlinear constraints amongst particular agents to understand the network dynamic evolution, controlling discrete Ricci flow may be necessary (e.g., we may seek to understand the entropic dynamics and curvature “flow” between two networks as opposed to solely curvature shrinkage). In turn, this can be formulated as a natural control problem for which we employ feedback control towards discrete Ricci-based flow and show that under certain discretization, namely Ollivier-Ricci curvature, one can show stability via Lyapunov analysis. We conclude with preliminary results with remarks on potential applications that will be a subject of future work.more » « less
-
In this paper, we generalize topological results known for noncompact manifolds with nonnegative Ricci curvature to spaces with nonnegative N N -Bakry Émery Ricci curvature. We study the Splitting Theorem and a property called the geodesic loops to infinity property in relation to spaces with nonnegative N N -Bakry Émery Ricci curvature. In addition, we show that if M n M^n is a complete, noncompact Riemannian manifold with nonnegative N N -Bakry Émery Ricci curvature where N > n N>n , then H n − 1 ( M , Z ) H_{n-1}(M,\mathbb {Z}) is 0 0 .more » « less