- Award ID(s):
- 1712633
- PAR ID:
- 10275654
- Date Published:
- Journal Name:
- Proc. Asil. Conf. Sig., Sys., and Comp
- Page Range / eLocation ID:
- 460 to 464
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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This paper considers a node-asynchronous implementation of rational (“IIR”) filters on graphs, in which the nodes are assumed to wake up randomly and independently from each other, and communicate only with their immediate neighbors. The underlying graph is allowed to be directed, possibly with a non-diagonalizable adjacency matrix. Since the nodes are allowed to act independently, the proposed implementation is practical for very large or autonomous networks where synchronization is difficult to achieve. Furthermore, the proposed algorithm is 1-hop localized on the graph irrespective of the order of the filter. The method is shown to converge in the mean-squared sense under a boundedness assumption on the filter as well as the graph operator. The result follows from the convergence of a more general randomized asynchronous state recursion, which is also presented in this paper. The algorithm is simulated on a random geometric graph, which numerically verifies the convergence.more » « less
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Abstract Motivation The de Bruijn graph is fundamental to the analysis of next generation sequencing data and so, as datasets of DNA reads grow rapidly, it becomes more important to represent de Bruijn graphs compactly while still supporting fast assembly. Previous implementations of compact de Bruijn graphs have not supported node or edge deletion, however, which is important for pruning spurious elements from the graph.
Results Belazzougui et al. (2016b) recently proposed a compact and fully dynamic representation, which supports exact membership queries and insertions and deletions of both nodes and edges. In this paper, we give a practical implementation of their data structure, supporting exact membership queries and fully dynamic edge operations, as well as limited support for dynamic node operations. We demonstrate experimentally that its performance is comparable to that of state-of-the-art implementations based on Bloom filters.
Availability and implementation Our source-code is publicly available at https://github.com/csirac/dynamicDBG under an open-source license.
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