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In this paper, we consider a coupled chemotaxis-fluid system that models self-organized collective behavior of oxytactic bacteria in a sessile drop. This model describes the biological chemotaxis phenomenon in the fluid environment and couples a convective chemotaxis system for the oxygen-consuming and oxytactic bacteria with the incompressible Navier–Stokes equations subject to a gravitational force, which is proportional to the relative surplus of the cell density compared to the water density. We develop a new positivity preserving and high-resolution method for the studied chemotaxis-fluid system. Our method is based on the diffuse-domain approach, which we use to derive a new chemotaxis-fluid diffuse-domain (cf-DD) model for simulating bioconvection in complex geometries. The drop domain is imbedded into a larger rectangular domain, and the original boundary is replaced by a diffuse interface with finite thickness. The original chemotaxis-fluid system is reformulated on the larger domain with additional source terms that approximate the boundary conditions on the physical interface. We show that the cf-DD model converges to the chemotaxis-fluid model asymptotically as the width of the diffuse interface shrinks to zero. We numerically solve the resulting cf-DD system by a second-order hybrid finite-volume finite-difference method and demonstrate the performance of the proposed approach on a number of numerical experiments that showcase several interesting chemotactic phenomena in sessile drops of different shapes, where the bacterial patterns depend on the droplet geometries.
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A diffuse domain method for two-phase flows with large density ratio in complex geometries
We present a quasi-incompressible Navier–Stokes–Cahn–Hilliard (q-NSCH) diffuse interface model for two-phase fluid flows with variable physical properties that maintains thermodynamic consistency. Then, we couple the diffuse domain method with this two-phase fluid model – yielding a new q-NSCH-DD model – to simulate the two-phase flows with moving contact lines in complex geometries. The original complex domain is extended to a larger regular domain, usually a cuboid, and the complex domain boundary is replaced by an interfacial region with finite thickness. A phase-field function is introduced to approximate the characteristic function of the original domain of interest. The original fluid model, q-NSCH, is reformulated on the larger domain with additional source terms that approximate the boundary conditions on the solid surface. We show that the q-NSCH-DD system converges to the q-NSCH system asymptotically as the thickness of the diffuse domain interface introduced by the phase-field function shrinks to zero ( $$\epsilon \rightarrow 0$$ ) with $$\mathcal {O}(\epsilon )$$ . Our analytic results are confirmed numerically by measuring the errors in both $$L^{2}$$ and $$L^{\infty }$$ norms. In addition, we show that the q-NSCH-DD system not only allows the contact line to move on curved boundaries, but also makes the fluid–fluid interface intersect the solid object at an angle that is consistent with the prescribed contact angle.
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- PAR ID:
- 10283127
- Date Published:
- Journal Name:
- Journal of Fluid Mechanics
- Volume:
- 907
- ISSN:
- 0022-1120
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1017/jfm.2020.790
