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1. High-Resolution Snow-Covered Area Mapping in Forested Mountain Ecosystems Using PlanetScope Imagery

   https://doi.org/10.3390/rs14143409  

   John, Aji; Cannistra, Anthony F.; Yang, Kehan; Tan, Amanda; Shean, David; Hille Ris Lambers, Janneke; Cristea, Nicoleta (July 2022, Remote Sensing)

   Improving high-resolution (meter-scale) mapping of snow-covered areas in complex and forested terrains is critical to understanding the responses of species and water systems to climate change. Commercial high-resolution imagery from Planet Labs, Inc. (Planet, San Francisco, CA, USA) can be used in environmental science, as it has both high spatial (0.7–3.0 m) and temporal (1–2 day) resolution. Deriving snow-covered areas from Planet imagery using traditional radiometric techniques have limitations due to the lack of a shortwave infrared band that is needed to fully exploit the difference in reflectance to discriminate between snow and clouds. However, recent work demonstrated that snow cover area (SCA) can be successfully mapped using only the PlanetScope 4-band (Red, Green, Blue and NIR) reflectance products and a machine learning (ML) approach based on convolutional neural networks (CNN). To evaluate how additional features improve the existing model performance, we: (1) build on previous work to augment a CNN model with additional input data including vegetation metrics (Normalized Difference Vegetation Index) and DEM-derived metrics (elevation, slope and aspect) to improve SCA mapping in forested and open terrain, (2) evaluate the model performance at two geographically diverse sites (Gunnison, Colorado, USA and Engadin, Switzerland), and (3) evaluate the model performance over different land-cover types. The best augmented model used the Normalized Difference Vegetation Index (NDVI) along with visible (red, green, and blue) and NIR bands, with an F-score of 0.89 (Gunnison) and 0.93 (Engadin) and was found to be 4% and 2% better than when using canopy height- and terrain-derived measures at Gunnison, respectively. The NDVI-based model improves not only upon the original band-only model’s ability to detect snow in forests, but also across other various land-cover types (gaps and canopy edges). We examined the model’s performance in forested areas using three forest canopy quantification metrics and found that augmented models can better identify snow in canopy edges and open areas but still underpredict snow cover under forest canopies. While the new features improve model performance over band-only options, the models still have challenges identifying the snow under trees in dense forests, with performance varying as a function of the geographic area. The improved high-resolution snow maps in forested environments can support studies involving climate change effects on mountain ecosystems and evaluations of hydrological impacts in snow-dominated river basins. 

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2. A Machine Learning and Remote Sensing‐Based Model for Algae Pigment and Dissolved Oxygen Retrieval on a Small Inland Lake

   https://doi.org/10.1029/2023WR035744  

   Beal, Maxwell_R_W; Özdoğan, Mutlu; Block, Paul_J (February 2024, Water Resources Research)

   Abstract Excessive algae growth can lead to negative consequences for ecosystem function, economic opportunity, and human and animal health. Due to the cost‐effectiveness and temporal availability of satellite imagery, remote sensing has become a powerful tool for water quality monitoring. The use of remotely sensed products to monitor water quality related to algae and cyanobacteria productivity during a bloom event may help inform management strategies for inland waters. To evaluate the ability of satellite imagery to monitor algae pigments and dissolved oxygen conditions in a small inland lake, chlorophyll‐a, phycocyanin, and dissolved oxygen concentrations are measured using a YSI EXO2 sonde during Sentinel‐2 and Sentinel‐3 overpasses from 2019 to 2022 on Lake Mendota, WI. Machine learning methods are implemented with existing algorithms to model chlorophyll‐a, phycocyanin, and Pc:Chla. A novel machine learning‐based dissolved oxygen modeling approach is developed using algae pigment concentrations as predictors. Best model results based on Sentinel‐2 (Sentinel‐3) imagery achieved R²scores of 0.47 (0.42) for chlorophyll‐a, 0.69 (0.22) for phycocyanin, and 0.70 (0.41) for Pc:Chla. Dissolved oxygen models achieved anR²of 0.68 (0.36) when applied to Sentinel‐2 (Sentinel‐3) imagery, and Pc:Chla is found to be the most important predictive feature. Random forest models are better suited to water quality estimations in this system given built in methods for feature selection and a relatively small data set. Use of these approaches for estimation of Pc:Chla and dissolved oxygen can increase the water quality information extracted from satellite imagery and improve characterization of algae conditions among inland waters. 

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3. CloudNet: A Deep Learning Approach for Mitigating Occlusions in Landsat-8 Imagery using Data Coalescence

   https://doi.org/10.1109/eScience55777.2022.00026  

   Khandelwal, Paahuni; Armstrong, Samuel; Matin, Abdul; Pallickara, Shrideep; Pallickara, Sangmi Lee (October 2022, 2022 IEEE 18th International Conference on e-Science (e-Science))

   Multi-spectral satellite images that remotely sense the Earth's surface at regular intervals are often contaminated due to occlusion by clouds. Remote sensing imagery captured via satellites, drones, and aircraft has successfully influenced a wide range of fields such as monitoring vegetation health, tracking droughts, and weather forecasting, among others. Researchers studying the Earth's surface are often hindered while gathering reliable observations due to contaminated reflectance values that are sensitive to thin, thick, and cirrus clouds, as well as their shadows. In this study, we propose a deep learning network architecture, CloudNet, to alleviate cloud-occluded remote sensing imagery captured by Landsat-8 satellite for both visible and non-visible spectral bands. We propose a deep neural network model trained on a distributed storage cluster that leverages historical trends within Landsat-8 imagery while complementing this analysis with high-resolution Sentinel-2 imagery. Our empirical benchmarks profile the efficiency of the CloudNet model with a range of cloud-occluded pixels in the input image. We further compare our CloudNet's performance with state-of-the-art deep learning approaches such as SpAGAN and Resnet. We propose a novel method, dynamic hierarchical transfer learning, to reduce computational resource requirements while training the model to achieve the desired accuracy. Our model regenerates features of cloudy images with a high PSNR accuracy of 34.28 dB. 

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4. Which Vegetation Index? Benchmarking Multispectral Metrics to Hyperspectral Mixture Models in Diverse Cropland

   https://doi.org/10.3390/rs15040971  

   Sousa, Daniel; Small, Christopher (February 2023, Remote Sensing)

   The monitoring of agronomic parameters like biomass, water stress, and plant health can benefit from synergistic use of all available remotely sensed information. Multispectral imagery has been used for this purpose for decades, largely with vegetation indices (VIs). Many multispectral VIs exist, typically relying on a single feature—the spectral red edge—for information. Where hyperspectral imagery is available, spectral mixture models can use the full VSWIR spectrum to yield further insight, simultaneously estimating area fractions of multiple materials within mixed pixels. Here we investigate the relationships between VIs and mixture models by comparing hyperspectral endmember fractions to six common multispectral VIs in California’s diverse crops and soils. In so doing, we isolate spectral effects from sensor- and acquisition-specific variability associated with atmosphere, illumination, and view geometry. Specifically, we compare: (1) fractional area of photosynthetic vegetation (Fv) from 64,000,000 3–5 m resolution AVIRIS-ng reflectance spectra; and (2) six popular VIs (NDVI, NIRv, EVI, EVI2, SR, DVI) computed from simulated Planet SuperDove reflectance spectra derived from the AVIRIS-ng spectra. Hyperspectral Fv and multispectral VIs are compared using both parametric (Pearson correlation, ρ) and nonparametric (Mutual Information, MI) metrics. Four VIs (NIRv, DVI, EVI, EVI2) showed strong linear relationships with Fv (ρ > 0.94; MI > 1.2). NIRv and DVI showed strong interrelation (ρ > 0.99, MI > 2.4), but deviated from a 1:1 correspondence with Fv. EVI and EVI2 were strongly interrelated (ρ > 0.99, MI > 2.3) and more closely approximated a 1:1 relationship with Fv. In contrast, NDVI and SR showed a weaker, nonlinear, heteroskedastic relation to Fv (ρ < 0.84, MI = 0.69). NDVI exhibited both especially severe sensitivity to unvegetated background (–0.05 < NDVI < +0.6) and saturation (0.2 < Fv < 0.8 for NDVI = 0.7). The self-consistent atmospheric correction, radiometry, and sun-sensor geometry allows this simulation approach to be further applied to indices, sensors, and landscapes worldwide. 

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5. Leaf-level chlorophyll fluorescence and reflectance spectra of high latitude plants

   https://doi.org/10.1088/2515-7620/ac5365  

   Huemmrich, K Fred; Campbell, Petya; Vargas Z, Sergio A; Sackett, Sarah; Unger, Steven; May, Jeremy; Tweedie, Craig; Middleton, Elizabeth (March 2022, Environmental Research Communications)

   Abstract Little is known about the chlorophyll fluorescence spectra for high latitude plants. A FluoWat leaf clip was used to measure leaf-level reflectance and chlorophyll fluorescence spectra of leaves of common high latitude plants to examine general spectral characteristics of these species. Fluorescence yield (Fyield) was calculated as the ratio of the emitted fluorescence divided by the absorbed radiation for the wavelengths from 400 nm up to the wavelength of the cut-off for the FluoWat low pass filter (either 650 or 700 nm). The Fyield spectra grouped into distinctly different patterns among different plant functional types. Black spruce ( Picea mariana ) Fyield spectra had little red fluorescence, which was reabsorbed in the shoot, but displayed a distinct far-red peak. Quaking aspen ( Populus tremuloides ) had both high red and far-red Fyield peaks, as did sweet coltsfoot ( Petasites frigidus ). Cotton grass ( Eriophorum spp.) had both red and far-red Fyield peaks, but these peaks were much lower than for aspen or coltsfoot. Sphagnum moss ( Sphagnum spp.) had a distinct Fyield red peak but low far-red fluorescence. Reindeer moss lichen ( Cladonia rangiferina ) had very low fluorescence levels, although when damp displayed a small red Fyield peak. These high latitude vegetation samples showed wide variations in Fyield spectral shapes. The Fyield values for the individual red or far-red peaks were poorly correlated to chlorophyll content, however the ratio of far-red to red Fyield showed a strong correlation with chlorophyll content. The spectral variability of these plants may provide information for remote sensing of vegetation type but may also confound attempts to measure high latitude vegetation biophysical characteristics and function using solar induced fluorescence (SIF). 

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