Abstract Nitrite is a central molecule in the nitrogen cycle because nitrite oxidation to nitrate (an aerobic process) retains fixed nitrogen in a system and its reduction to dinitrogen gas (anaerobic) reduces the fixed nitrogen inventory. Despite its acknowledged requirement for oxygen, nitrite oxidation is observed in oxygen-depleted layers of the ocean’s oxygen minimum zones (OMZs), challenging the current understanding of OMZ nitrogen cycling. Previous attempts to determine whether nitrite-oxidizing bacteria in the anoxic layer differ from known nitrite oxidizers in the open ocean were limited by cultivation difficulties and sequencing depth. Here, we construct 31 draft genomes of nitrite-oxidizing bacteria from global OMZs. The distribution of nitrite oxidation rates, abundance and expression of nitrite oxidoreductase genes, and relative abundance of nitrite-oxidizing bacterial draft genomes from the same samples all show peaks in the core of the oxygen-depleted zone (ODZ) and are all highly correlated in depth profiles within the major ocean oxygen minimum zones. The ODZ nitrite oxidizers are not found in the Tara Oceans global dataset (the most complete oxic ocean dataset), and the major nitrite oxidizers found in the oxygenated ocean do not occur in ODZ waters. A pangenomic analysis shows the ODZ nitrite oxidizers have distinct gene clusters compared to oxic nitrite oxidizers and are microaerophilic. These findings all indicate the existence of nitrite oxidizers whose niche is oxygen-deficient seawater. Thus, specialist nitrite-oxidizing bacteria are responsible for fixed nitrogen retention in marine oxygen minimum zones, with implications for control of the ocean’s fixed nitrogen inventory.
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Microbial N2O consumption in and above marine N2O production hotspots
Abstract The ocean is a net source of N 2 O, a potent greenhouse gas and ozone-depleting agent. However, the removal of N 2 O via microbial N 2 O consumption is poorly constrained and rate measurements have been restricted to anoxic waters. Here we expand N 2 O consumption measurements from anoxic zones to the sharp oxygen gradient above them, and experimentally determine kinetic parameters in both oxic and anoxic seawater for the first time. We find that the substrate affinity, O 2 tolerance, and community composition of N 2 O-consuming microbes in oxic waters differ from those in the underlying anoxic layers. Kinetic parameters determined here are used to model in situ N 2 O production and consumption rates. Estimated in situ rates differ from measured rates, confirming the necessity to consider kinetics when predicting N 2 O cycling. Microbes from the oxic layer consume N 2 O under anoxic conditions at a much faster rate than microbes from anoxic zones. These experimental results are in keeping with model results which indicate that N 2 O consumption likely takes place above the oxygen deficient zone (ODZ). Thus, the dynamic layer with steep O 2 and N 2 O gradients right above the ODZ is a previously ignored potential gatekeeper of N 2 O and should be accounted for in the marine N 2 O budget.
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- Award ID(s):
- 1657663
- PAR ID:
- 10298737
- Date Published:
- Journal Name:
- The ISME Journal
- Volume:
- 15
- Issue:
- 5
- ISSN:
- 1751-7362
- Page Range / eLocation ID:
- 1434 to 1444
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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