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1. Representation of Leaf‐to‐Canopy Radiative Transfer Processes Improves Simulation of Far‐Red Solar‐Induced Chlorophyll Fluorescence in the Community Land Model Version 5

   https://doi.org/10.1029/2021MS002747  

   Li, Rong ; Lombardozzi, Danica ; Shi, Mingjie ; Frankenberg, Christian ; Parazoo, Nicholas C. ; Köhler, Philipp ; Yi, Koong ; Guan, Kaiyu ; Yang, Xi ( March 2022 , Journal of Advances in Modeling Earth Systems)

   Recent advances in satellite observations of solar‐induced chlorophyll fluorescence (SIF) provide a new opportunity to constrain the simulation of terrestrial gross primary productivity (GPP). Accurate representation of the processes driving SIF emission and its radiative transfer to remote sensing sensors is an essential prerequisite for data assimilation. Recently, SIF simulations have been incorporated into several land surface models, but the scaling of SIF from leaf‐level to canopy‐level is usually not well‐represented. Here, we incorporate the simulation of far‐red SIF observed at nadir into the Community Land Model version 5 (CLM5). Leaf‐level fluorescence yield was simulated by a parametric simplification of the Soil Canopy‐Observation of Photosynthesis and Energy fluxes model (SCOPE). And an efficient and accurate method based on escape probability is developed to scale SIF from leaf‐level to top‐of‐canopy while taking clumping and the radiative transfer processes into account. SIF simulated by CLM5 and SCOPE agreed well at sites except one in needleleaf forest (R² > 0.91, root‐mean‐square error <0.19 W⋅m⁻²⋅sr⁻¹⋅μm⁻¹), and captured the day‐to‐day variation of tower‐measured SIF at temperate forest sites (R² > 0.68). At the global scale, simulated SIF generally captured the spatial and seasonal patterns of satellite‐observed SIF. Factors including the fluorescence emission model, clumping, bidirectional effect, and leaf optical properties had considerable impacts on SIF simulation, and the discrepancies between simulate d and observed SIF varied with plant functional type. By improving the representation of radiative transfer for SIF simulation, our model allows better comparisons between simulated and observed SIF toward constraining GPP simulations.

    

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2. Chlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest

   https://doi.org/10.1111/gcb.13590  

   Yang, Hualei ; Yang, Xi ; Zhang, Yongguang ; Heskel, Mary A. ; Lu, Xiaoliang ; Munger, J. William ; Sun, Shucun ; Tang, Jianwu ( January 2017 , Global Change Biology)

   Accurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales and explored how leaf‐level ChlF was linked with canopy‐scale solar‐induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts,USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R² = 0.73, 0.77, and 0.86 at leaf, canopy, and satellite scales, respectively;P < 0.0001). We developed a model to estimateGPPfrom the tower‐based measurement ofSIFand leaf‐level ChlF parameters. The estimation ofGPPfrom this model agreed well with flux tower observations ofGPP(R² = 0.68;P < 0.0001), demonstrating the potential ofSIFfor modelingGPP. At the leaf scale, we found that leafF_q’/F_m’, the fraction of absorbed photons that are used for photochemistry for a light‐adapted measurement from a pulse amplitude modulation fluorometer, was the best leaf fluorescence parameter to correlate with canopySIFyield (SIF/APAR,R² = 0.79;P < 0.0001). We also found that canopySIFandSIF‐derivedGPP(GPP_SIF) were strongly correlated to leaf‐level biochemistry and canopy structure, including chlorophyll content (R² = 0.65 for canopyGPP_SIFand chlorophyll content;P < 0.0001), leaf area index (LAI) (R² = 0.35 for canopyGPP_SIFandLAI;P < 0.0001), and normalized difference vegetation index (NDVI) (R² = 0.36 for canopyGPP_SIFandNDVI;P < 0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales.

    

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3. Formulation of a Consistent Multi‐Species Canopy Description for Hydrodynamic Models Embedded in Large‐Scale Land‐Surface Representations of Mixed‐Forests

   https://doi.org/10.1029/2022JG006982  

   Bohrer, G. ; Missik, J. E. C. ( July 2022 , Journal of Geophysical Research: Biogeosciences)

   The plant hydrodynamic approach represents a recent advancement to land surface modeling, in which stomatal conductance responds to water availability in the xylem rather than in the soil. To provide a realistic representation of tree hydrodynamics, hydrodynamic models must resolve processes at the level of a single modeled tree, and then scale the resulting fluxes to the canopy and land surface. While this tree‐to‐canopy scaling is trivial in a homogeneous canopy, mixed‐species canopies require careful representation of the species properties and a scaling approach that results in a realistic description of both the canopy and individual‐tree hydrodynamics, as well as leaf‐level fluxes from the canopy and their forcing. Here, we outline advantages and pitfalls of three commonly used approaches for representing mixed forests in land surface models and present a new framework for scaling vegetation characteristics and fluxes in mixed forests. The new formulation scales fluxes from the tree to canopy level in an energy‐ and mass‐conservative way and allows for a consistent multi‐species/multi‐type canopy description by hydrodynamic models.

    

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4. Experimental warming across a tropical forest canopy height gradient reveals minimal photosynthetic and respiratory acclimation

   https://doi.org/10.1111/pce.14134  

   Carter, Kelsey R. ; Wood, Tana E. ; Reed, Sasha C. ; Butts, Kaylie M. ; Cavaleri, Molly A. ( July 2021 , Plant, Cell & Environment)

   Tropical forest canopies cycle vast amounts of carbon, yet we still have a limited understanding of how these critical ecosystems will respond to climate warming. We implemented in situ leaf‐level + 3°C experimental warming from the understory to the upper canopy of two Puerto Rican tropical tree species,Guarea guidoniaandOcotea sintenisii. After approximately 1 month of continuous warming, we assessed adjustments in photosynthesis, chlorophyll fluorescence, stomatal conductance, leaf traits and foliar respiration. Warming did not alter net photosynthetic temperature response for either species; however, the optimum temperature ofOcoteaunderstory leaf photosynthetic electron transport shifted upward. There was noOcotearespiratory treatment effect, whileGuarearespiratory temperature sensitivity (Q₁₀) was down‐regulated in heated leaves. The optimum temperatures for photosynthesis (T_opt) decreased 3–5°C from understory to the highest canopy position, perhaps due to upper canopy stomatal conductance limitations.Guareaupper canopyT_optwas similar to the mean daytime temperatures, whileOcoteacanopy leaves often operated aboveT_opt. With minimal acclimation to warmer temperatures in the upper canopy, further warming could put these forests at risk of reduced CO₂uptake, which could weaken the overall carbon sink strength of this tropical forest.

    

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5. Improving the ability of solar-induced chlorophyll fluorescence to track gross primary production through differentiating sunlit and shaded leaves

   https://doi.org/10.1016/j.agrformet.2023.109658  

   Zhang, Zhaoying ; Chen, Jing M ; Zhang, Yongguang ; Li, Manchun ( October 2023 , Agricultural and Forest Meteorology)

   Recently, solar-induced chlorophyll fluorescence (SIF) is a promising tool to estimate gross primary production (GPP). Photosynthesis gradually saturates with the increasing light, but fluorescence tends to keep increasing, leading to a nonlinear SIF-GPP relationship. This nonlinearity occurs for sunlit leaves but not for shaded leaves for which photosynthesis is light-limited. However, the separation of sunlit and shaded SIF has not been systematically investigated when estimating GPP from SIF. Therefore, it is promising to develop a model for GPP estimation considering such differences. This study proposed an approach to separate the total canopy SIF emission (SIFtotal) from TROPOspheric Monitoring Instrument (TROPOMI) SIF into their sunlit and shaded components (SIFsun and SIFshade). The nonlinearity and linearity in SIF-GPP relationships for sunlit and shaded leaves were incorporated into a two-leaf hybrid model, which was fitted using flux tower data and then evaluated using leave-one-site-out crossing validation. We also elucidated the distinct SIF-GPP relationships between sunlit and shaded leaves using the Soil-Canopy-Observation of Photosynthesis and the Energy balance (SCOPE) model simulation. Compared to previously used linear (R2 = 0.68, RMSE = 2.13 gC⋅m^-2*d^-1) or hyperbolic (R2 = 0.72, RMSE = 2.01 gC⋅m^-2⋅d^-1) model based on the big-leaf assumption, our proposed two-leaf hybrid model has the best performance on GPP estimation (R2 = 0.77, RMSE = 1.79 gC⋅m^-2⋅d^-1). We also applied this two-leaf hybrid model to estimate the global GPP during the main growing season in Northern Hemisphere, which were highly correlated with several existing GPP products, with R2 ranging from 0.79 to 0.88. These results will improve our understanding of the relationship between SIF and GPP for sunlit and shaded leaves and will advance application of satellite SIF data to GPP estimation. 

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