skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Graph Neural Network for Metal Organic Framework Potential Energy Approximation
Metal-organic frameworks (MOFs) are nanoporous compounds composed of metal ions and organic linkers. MOFs play an important role in industrial applications such as gas separation, gas purification, and electrolytic catalysis. Important MOF properties such a potential energy are currently computed via techniques such as density functional theory (DFT). Although DFT provides accurate results, it is computationally costly. We propose a machine learning approach for estimating the potential energy of candidate MOFs, decomposing it into separate pair-wise atomic interactions using a graph neural network. Such a technique will allow high-throughput screening of candidates MOFs. We also generate a database of 50,000 spatial configurations and high quality potential energy values using DFT.  more » « less
Award ID(s):
1940243
PAR ID:
10314701
Author(s) / Creator(s):
; ; ;
Date Published:
Journal Name:
Machine Learning for Molecules Workshop at NeurIPS 2020
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. The flexibility of metal–organic frameworks (MOFs) affects their gas adsorption and diffusion properties. However, reliable force fields for simulating flexible MOFs are lacking. As a result, most atomistic simulations so far have been carried out assuming rigid MOFs, which inevitably overestimates the gas adsorption energy. Here, we show that this issue can be addressed by applying a machine-learning potential, trained on quantum chemistry data, to atomistic simulations. We find that inclusion of flexibility is particularly important for simulating CO2 chemisorption in MOFs with coordinatively unsaturated metal sites. Specifically, we demonstrate that the diffusion of CO2 in a flexible Mg-MOF-74 structure is about one order of magnitude faster than in a rigid one, challenging the rigid-MOF assumption in previous simulations. 
    more » « less
  2. Abstract Thermal energy management in metal-organic frameworks (MOFs) is an important, yet often neglected, challenge for many adsorption-based applications such as gas storage and separations. Despite its importance, there is insufficient understanding of the structure-property relationships governing thermal transport in MOFs. To provide a data-driven perspective into these relationships, here we perform large-scale computational screening of thermal conductivitykin MOFs, leveraging classical molecular dynamics simulations and 10,194 hypothetical MOFs created using the ToBaCCo 3.0 code. We found that high thermal conductivity in MOFs is favored by high densities (> 1.0 g cm−3), small pores (< 10 Å), and four-connected metal nodes. We also found that 36 MOFs exhibit ultra-low thermal conductivity (< 0.02 W m−1 K−1), which is primarily due to having extremely large pores (~65 Å). Furthermore, we discovered six hypothetical MOFs with very high thermal conductivity (> 10 W m−1 K−1), the structures of which we describe in additional detail. 
    more » « less
  3. Abstract Metal–organic frameworks (MOFs) are highly porous and versatile materials studied extensively for applications such as carbon capture and water harvesting. However, computing phonon-mediated properties in MOFs, like thermal expansion and mechanical stability, remains challenging due to the large number of atoms per unit cell, making traditional Density Functional Theory (DFT) methods impractical for high-throughput screening. Recent advances in machine learning potentials have led to foundation atomistic models, such as MACE-MP-0, that accurately predict equilibrium structures but struggle with phonon properties of MOFs. In this work, we developed a workflow for computing phonons in MOFs within the quasi-harmonic approximation with a fine-tuned MACE model, MACE-MP-MOF0. The model was trained on a curated dataset of 127 representative and diverse MOFs. The fine-tuned MACE-MP-MOF0 improves the accuracy of phonon density of states and corrects the imaginary phonon modes of MACE-MP-0, enabling high-throughput phonon calculations with state-of-the-art precision. The model successfully predicts thermal expansion and bulk moduli in agreement with DFT and experimental data for several well-known MOFs. These results highlight the potential of MACE-MP-MOF0 in guiding MOF design for applications in energy storage and thermoelectrics. 
    more » « less
  4. Functional porous metal–organic frameworks (MOFs) have been explored for a number of potential applications in catalysis, chemical sensing, water capture, gas storage, and separation. MOFs are among the most promising candidates to address challenges facing our society related to energy and environment, but the successful implementation of functional porous MOF materials are contingent on their stability; therefore, the rational design of stable MOFs plays an important role towards the development of functional porous MOFs. In this Focus article, we summarize progress in the rational design and synthesis of stable MOFs with controllable pores and functionalities. The implementation of reticular chemistry allows for the rational top-down design of stable porous MOFs with targeted topological networks and pore structures from the pre-selected building blocks. We highlight the reticular synthesis and applications of stable MOFs: (1) MOFs based on high valent metal ions ( e.g. , Al 3+ , Cr 3+ , Fe 3+ , Ti 4+ and Zr 4+ ) and carboxylate ligands; (2) MOFs based on low valent metal ions ( e.g. , Ni 2+ , Cu 2+ , and Zn 2+ ) and azolate linkers. We envision that the synthetic strategies, including modulated synthesis and post-synthetic modification, can potentially be extended to other more complex systems like metal-phosphonate framework materials. 
    more » « less
  5. Water is the most abundant and cleanest natural resource on earth, and it is the driving force of all nature. It not only affects food security, human health, and ecosystem integrity and maintenance, but is also an important driver of energy in industrial production and life. Importantly, water adsorption applications are considered to be highly energy-efficient and environmentally friendly technologies,1 including atmospheric water harvesting,2-4 desiccation of clean gases,5 indoor humidity control,6,7 and adsorptive heat transformation.8,9 However, current water adsorption-related applications are still constrained by properties of adsorbents, such as their low water uptake capacities, poor cyclic stabilities, limited feasibilities over a range of humidity conditions, and minimal commercial availabilities. Conventional nanoporous materials (e.g., silica gels, zeolites, and clays) were the first adsorbents used in water capture applications due to their low cost, commercial availability, and favorable water adsorption kinetics. However, these materials generally suffer from either low water uptake capacities or high regeneration temperature, limiting their use in practical water absorption applications.1,10 Metal-organic frameworks (MOFs), a class of crystalline porous materials, are assembled from inorganic nodes and organic linkers through coordination bonds.11,12 Benefiting from their exceptional porosity and surface area, tunable pore size and geometry, and highly tailorable and designable structures and functionalities, MOFs show considerable potential for gas storage and separation, heterogeneous catalysis, and other energy and environmental sustainability applications.13-17 In recent years, MOFs have also shown great potential for water vapor adsorption because of a growing understanding of the relationship between MOFs and water, as well as an increasing number of reports detailing MOFs that exhibit high water stability.1,4,9 Moreover, judicious design of the MOF structures enables control over their water adsorption properties and the water uptake capacities, which make MOFs ideal candidates for water adsorption-related applications. This review aims to provide an overview of recent advances in the development of MOFs for water adsorption, as well as to offer proposed guidelines to develop even better water adsorption materials. First, we briefly introduce the fundamentals of water adsorption, including how to ascertain key insights based on the shapes of water adsorption isotherms, descriptions of various water adsorption mechanisms, and a discussion on the stability of MOFs in water systems. Next, we discuss several recent reports have detailed how to improve water uptake capacity through the design and synthesis of MOFs. In particular, we highlight the importance of reticular chemistry in the designed synthesis of MOF-based water adsorbent materials. We then shift our focus to discussing the enormous potential of MOFs for use in selective water vapor adsorption applications with both theoretical and practical considerations considered. Finally, we offer our thoughts on the future development of this field in three aspects: chemistry and materials design, process engineering, and commercialization of MOFs for water adsorption. We hope that this review will provide fundamental insights for chemists and inspire them to synthesize MOFs with better water adsorption performance; and provide assistance to engineers researching MOF-based water adsorption devices and working towards the development of highly energy-efficient and environmentally friendly technologies with reduced carbon footprints. 
    more » « less