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1. Hadal trenches are dynamic hotspots for early diagenesis in the deep sea

   https://doi.org/10.1038/s43247-020-00087-2  

   Glud, Ronnie N.; Berg, Peter; Thamdrup, Bo; Larsen, Morten; Stewart, Heather A.; Jamieson, Alan J.; Glud, Anni; Oguri, Kazumasa; Sanei, Hamed; Rowden, Ashley A.; et al (December 2021, Communications Earth & Environment)

   null (Ed.)

   Abstract The deepest part of the global ocean, hadal trenches, are considered to act as depocenters for organic material. Relatively high microbial activity has been demonstrated in the deepest sections of some hadal trenches, but the deposition dynamics are thought to be spatially and temporally variable. Here, we explore sediment characteristics and in-situ benthic oxygen uptake along two trenches with contrasting surface primary productivity: the Kermadec and Atacama trenches. We find that benthic oxygen consumption varies by a factor of about 10 between hadal sites but is in all cases intensified relative to adjacent abyssal plains. The benthic oxygen uptake of the two trench regions reflects the difference in surface production, whereas variations within each trench are modulated by local deposition dynamics. Respiratory activity correlates with the sedimentary inventories of organic carbon and phytodetrital material. We argue that hadal trenches represent deep sea hotspots for early diagenesis and are more diverse and dynamic environments than previously recognized. 

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2. The Meioflume: A New System for Observing the Interstitial Behavior of Meiofauna

   https://doi.org/10.1093/iob/obae016  

   Ballentine, W_M; Dorgan, K_M (May 2024, Integrative Organismal Biology)

   Synopsis Meiofauna (benthic invertebrates < 1 mm in size) facilitate sediment biogeochemical cycling, alter sediment microbial community structure, and serve as an important trophic link between benthic micro- and macrofauna, yet the behaviors that mechanistically link individuals to their ecological effects are largely unknown. Meiofauna are small and sediments are opaque, making observing the in situ activities of these animals challenging. We developed the Meioflume, a small, acrylic flow tunnel filled with grains of cryolite, a transparent sand analog, to simulate the in situ conditions experienced by meiofauna in an observable lab environment. The Meioflume has a working area (28.57 mm × 10.16 mm × 1 mm) that is small enough to quickly locate fauna and clearly observe behavior but large enough that animals are not tightly confined. When connected to a syringe press, the Meioflume can produce low velocity flows consistently and evenly across the width of its working area while retaining the contents. To demonstrate its functionality in observing the behavior of meiofauna, we placed individual meiofaunal animals (a protodrilid annelid, a harpacticoid copepod, and a platyhelminth flatworm) in Meioflumes and filmed their behavioral response to a sudden initiation of porewater flow. All animals were clearly visible within the flume and could be observed responding to the onset of flow. The design and construction of the Meioflume make it an accessible, affordable tool for researchers. This experimental system could be modified to address many questions in meiofaunal ecology, such as studying behavior in response to chemical cues, allowing us to observe meiofaunal behaviors to better understand their ecological effects. 

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3. MEIOFAUNA IN TROPICAL MONTANE STREAMS: BIOTIC AND ABIOTIC FACTORS REGULATING COMMUNITIES

   https://doi.org/10.15446/abc.v28n2.103379  

   Santiago-Vera, Josue; Ramírez, Alonso (May 2023, Acta Biológica Colombiana)

   Meiofauna is a group of heterotrophic organisms smaller than macroinvertebrates but larger than microfauna and characterized by groups such as testate amoebae, ciliates, and nematodes. They are a link between bacteria and resources and macroinvertebrates. However, tropical meiofauna is poorly studied; thus, our goal was to characterize meiofaunal community composition and abundance and assess potential environmental variables controlling these community dynamics. Monthly samplings of meiofauna were conducted for eight months in Quebrada Prieta, El Yunque National Forest, Puerto Rico. Sampling was made in 12 pools, and data on discharge, sediment characteristics, and biotic variables were also collected. A total of 62 meiofaunal morphospecies were identified, with nematodes dominating the community, followed by testate amoebae. Bacterivores and detritivores taxa dominated the community. Meiofaunal abundance was negatively related to discharge and positively to the percentage of coarse sand, nitrate, and macroinvertebrate abundance. The composition of meiofauna in Quebrada Prieta is like the composition reported for temperate streams, at least in major meiofaunal groups present. However, the community in Quebrada Prieta was dominated by testate amoebae. In contrast, temperate streams are often dominated by rotifers and nematodes. Both abiotic and biotic variables are important for meiofaunal communities in the headwater streams in Puerto Rico. 

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4. Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles

   https://doi.org/10.1128/msphere.00032-22  

   Blanton, Jessica M.; Peoples, Logan M.; Gerringer, Mackenzie E.; Iacuaniello, Caroline M.; Gallo, Natalya D.; Linley, Thomas D.; Jamieson, Alan J.; Drazen, Jeffrey C.; Bartlett, Douglas H.; Allen, Eric E. (April 2022, mSphere)

   Campbell, Barbara J. (Ed.)

   ABSTRACT Hadal snailfishes are the deepest-living fishes in the ocean, inhabiting trenches from depths of ∼6,000 to 8,000 m. While the microbial communities in trench environments have begun to be characterized, the microbes associated with hadal megafauna remain relatively unknown. Here, we describe the gut microbiomes of two hadal snailfishes, Pseudoliparis swirei (Mariana Trench) and Notoliparis kermadecensis (Kermadec Trench), using 16S rRNA gene amplicon sequencing. We contextualize these microbiomes with comparisons to the abyssal macrourid Coryphaenoides yaquinae and the continental shelf-dwelling snailfish Careproctus melanurus . The microbial communities of the hadal snailfishes were distinct from their shallower counterparts and were dominated by the same sequences related to the Mycoplasmataceae and Desulfovibrionaceae . These shared taxa indicate that symbiont lineages have remained similar to the ancestral symbiont since their geographic separation or that they are dispersed between geographically distant trenches and subsequently colonize specific hosts. The abyssal and hadal fishes contained sequences related to known, cultured piezophiles, microbes that grow optimally under high hydrostatic pressure, including Psychromonas , Moritella , and Shewanella . These taxa are adept at colonizing nutrient-rich environments present in the deep ocean, such as on particles and in the guts of hosts, and we hypothesize they could make a dietary contribution to deep-sea fishes by degrading chitin and producing fatty acids. We characterize the gut microbiota within some of the deepest fishes to provide new insight into the diversity and distribution of host-associated microbial taxa and the potential of these animals, and the microbes they harbor, for understanding adaptation to deep-sea habitats. IMPORTANCE Hadal trenches, characterized by high hydrostatic pressures and low temperatures, are one of the most extreme environments on our planet. By examining the microbiome of abyssal and hadal fishes, we provide insight into the diversity and distribution of host-associated life at great depth. Our findings show that there are similar microbial populations in fishes geographically separated by thousands of miles, reflecting strong selection for specific microbial lineages. Only a few psychropiezophilic taxa, which do not reflect the diversity of microbial life at great depth, have been successfully isolated in the laboratory. Our examination of deep-sea fish microbiomes shows that typical high-pressure culturing methodologies, which have largely remained unchanged since the pioneering work of Claude ZoBell in the 1950s, may simulate the chemical environment found in animal guts and helps explain why the same deep-sea genera are consistently isolated. 

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5. Lake Sediment Methane Responses to Organic Matter are Related to Microbial Community Composition in Experimental Microcosms

   https://doi.org/10.3389/fenvs.2022.834829  

   Bertolet, Brittni L.; Koepfli, Cristian; Jones, Stuart E. (March 2022, Frontiers in Environmental Science)

   Lake sediment microbial communities mediate carbon diagenesis. However, microbial community composition is variable across lakes, and it is still uncertain how variation in community composition influences sediment responses to environmental change. Sediment methane (CH 4 ) production has been shown to be substantially elevated by increased lake primary productivity and organic matter supply. However, the magnitude of the response of CH 4 production varies across lakes, and recent studies suggest a role for the microbial community in mediating this response. Here, we conducted sediment incubation experiments across 22 lakes to determine whether variation in sediment microbial community composition is related to the response of sediment CH 4 production to increases in organic matter. We sampled the 22 lakes across a gradient of pH in order to investigate lakes with variable sediment microbial communities. We manipulated the incubations with additions of dried algal biomass and show that variation in the response of CH 4 production to changes in organic matter supply is significantly correlated with metrics of sediment microbial community composition. Specifically, the diversity and richness of the non-methanogen community was most predictive of sediment CH 4 responses to organic matter additions. Additionally, neither metrics of microbial abundance nor preexisting organic matter availability explained meaningful variation in the response. Thus, our results provide experimental support that differences in sediment microbial communities influences CH 4 production responses to changes in organic matter availability. 

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