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1. Monitoring of Suspended Sediment Mineralogy in Puerto-Rican Rivers: Effects of Flowrate and Lithology

   https://doi.org/10.3390/min13020208  

   Mackowiak, Trevor J.; Perdrial, Nicolas (February 2023, Minerals)

   Climate change induced changes in river flow dynamics have the potential to change the composition of suspended sediments in crucial tropical river ecosystems, possibly affecting their resiliency. This study investigates how changes in river discharge and bedrock lithology affected the physiochemical nature of river suspended sediments over a typical year in three Puerto-Rican rivers. Suspended sediment samples were collected on filter membranes in 2006 from three watersheds of differing lithology (quartz-diorite, volcaniclastic, and mixed lithology) in the Luquillo Mountains, Puerto-Rico. By monitoring changes in suspended sediment mineralogical composition (determined by XRD and SEM) as a function of discharge, we determined how sediment loads responded to changes in hydrological input in a typical year. Results showed that bedrock lithology influenced river suspended sediment mineralogy, with the fraction of crystalline versus amorphous material strongly influenced by the dominant lithology of the watershed. Crystalline phases were associated with granodiorite bedrock compared to amorphous material dominating the volcaniclastic watersheds. Thus, the mineralogy of suspended sediments in the river systems was controlled by secondary minerals. Mineralogical results showed that, bearing quantitative changes upon hydrological events, suspended sediments in all three watersheds returned to baseline composition post storm events, suggesting that the three watersheds are resilient to the events recorded that year. While the long-term mineralogical analysis of the evolution of suspended material in the studied rivers provided insights into river response to hydrologic events, it also proved technically challenging as materials in suspension in such pristine rivers are sparse and poorly crystalline. 

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2. Long‐term stability of tropical forest metacommunities in Puerto Rico: Native and non‐native species

   https://doi.org/10.1111/btp.13419  

   Presley, Steven J; Rojas‐Sandoval, Julissa; Willig, Michael R (January 2025, Biotropica)

   Abstract Anthropogenic disturbances alter trajectories of ecological succession, introduce spatiotemporal variability in the composition of communities, and potentially create communities that differ substantially from those prior to disturbance. Invasive species are introduced or spread by human activities, with considerable effect on native ecosystems throughout the world. We evaluate the temporal stability of woody plant metacommunity structures and the mechanisms that give rise to them in a tropical disturbance‐mediated environment. We used data collected over 20 years to (1) evaluate elements of metacommunity structure, (2) identify the gradients along which metacommunities are structured, and (3) quantify the relative contributions of environmental and spatial factors on variation in species composition. Analyses were conducted separately for combinations of life zone (areas defined by edaphic features and climate) and species origin (native versus non‐native). Native species exhibited compartmentalized structures (i.e., groups of species with similar distributions that are replaced by other such groups along a gradient), whereas non‐natives exhibited random structures. Metacommunities based on all species were consistently compartmentalized, except in dry forest, which exhibited random structure. Compartmentalized structures occurred along gradients defined by life zone and soil type, whereas no environmental factors were consistently associated with random structures. Metacommunity structure was stable through time despite a complex disturbance regime. Dry forests, which have experienced the most extensive and intensive history of anthropogenic disturbances of any life zone on Puerto Rico are characterized by degraded and fragmented landscapes, with species that do not respond to a common environmental gradient. 

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3. Microbial Growth and Organic Matter Cycling in the Pacific Ocean Along a Latitudinal Transect Between Subarctic and Subantarctic Waters

   https://doi.org/10.3389/fmars.2021.764383  

   Giebel, Helge-Ansgar; Arnosti, Carol; Badewien, Thomas H.; Bakenhus, Insa; Balmonte, John Paul; Billerbeck, Sara; Dlugosch, Leon; Henkel, Rohan; Kuerzel, Birgit; Meyerjürgens, Jens; et al (December 2021, Frontiers in Marine Science)

   The Pacific Ocean constitutes about half of the global oceans and thus microbial processes in this ocean have a large impact on global elemental cycles. Despite several intensely studied regions large areas are still greatly understudied regarding microbial activities, organic matter cycling and biogeography. Refined information about these features is most important to better understand the significance of this ocean for global biogeochemical and elemental cycles. Therefore we investigated a suite of microbial and geochemical variables along a transect from the subantarctic to the subarctic Pacific in the upper 200 m of the water column. The aim was to quantify rates of organic matter processing, identify potential controlling factors and prokaryotic key players. The assessed variables included abundance of heterotrophic prokaryotes and cyanobacteria, heterotrophic prokaryotic production (HPP), turnover rate constants of amino acids, glucose, and acetate, leucine aminopeptidase and β-glucosidase activities, and the composition of the bacterial community by fluorescence in situ hybridization (FISH). The additional quantification of nitrate, dissolved amino acids and carbohydrates, chlorophyll a , particulate organic carbon and nitrogen (POC, PON) provided a rich environmental context. The oligotrophic gyres exhibited the lowest prokaryotic abundances, rates of HPP and substrate turnover. Low nucleic acid prokaryotes dominated in these gyres, whereas in temperate and subpolar regions further north and south, high nucleic acid prokaryotes dominated. Turnover rate constants of glucose and acetate, as well as leucine aminopeptidase activity, increased from (sub)tropical toward the subpolar regions. In contrast, HPP and bulk growth rates were highest near the equatorial upwelling and lowest in the central gyres and subpolar regions. The SAR11 clade, the Roseobacter group and Flavobacteria constituted the majority of the prokaryotic communities. Vertical profiles of the biogeochemical and microbial variables markedly differed among the different regions and showed close covariations of the microbial variables and chlorophyll a , POC and PON. The results show that hydrographic, microbial, and biogeochemical properties exhibited distinct patterns reflecting the biogeographic provinces along the transect. The microbial variables assessed contribute to a better and refined understanding of the scales of microbial organic matter processing in large areas of the epipelagic Pacific beyond its well-studied regions. 

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4. River Microbiome and Watershed Characteristics Analysis

   https://doi.org/10.5281/zenodo.3902478  

   URycki, Dawn R; Good, Stephen P (January 2020, Zenodo)

   This entry contains the data and code for the analysis described in URycki DR, Good SP, Crump BC, Chadwick J and Jones GD (2020) River Microbiome Composition Reflects Macroscale Climatic and Geomorphic Differences in Headwater Streams. Frontiers in Water 2:574728. doi: 10.3389/frwa.2020.574728 Abstract: Maintaining the quality and quantity of water resources in light of complex changes in climate, human land use, and ecosystem composition requires detailed understanding of ecohydrologic function within catchments, yet monitoring relevant upstream characteristics can be challenging. In this study, we investigate how variability in riverine microbial communities can be used to monitor the climate, geomorphology, land-cover, and human development of watersheds. We collected streamwater DNA fragments and used 16S rRNA sequencing to profile microbiomes from headwaters to outlets of the Willamette and Deschutes basins, two large watersheds prototypical of the U.S. Pacific Northwest region. In the temperate, north-south oriented Willamette basin, microbial community composition correlated most strongly with geomorphic characteristics (mean Mantel test statistic r = 0.19). Percentage of forest and shrublands (r = 0.34) and latitude (r = 0.41) were among the strongest correlates with microbial community composition. In the arid Deschutes basin, however, climatic characteristics were the most strongly correlated to microbial community composition (e.g., r = 0.11). In headwater sub-catchments of both watersheds, microbial community assemblages correlated with catchment-scale climate, geomorphology, and land-cover (r = 0.46, 0.38, and 0.28, respectively), but these relationships were weaker downstream. Development-related characteristics were not correlated with microbial community composition in either watershed or in small or large sub-catchments. Our results build on previous work relating streamwater microbiomes to hydrologic regime and demonstrate that microbial DNA in headwater streams additionally reflects the structural configuration of landscapes as well as other natural and anthropogenic processes upstream. Our results offer an encouraging indication that streamwater microbiomes not only carry information about microbial ecology, but also can be useful tools for monitoring multiple upstream watershed characteristics. 

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5. Planktic diatom responses to spatiotemporal environmental variation in high‐mountain tropical lakes

   https://doi.org/10.1111/fwb.14218  

   Luethje, Melina; Mosquera, Pablo V; Hampel, Henrietta; Fritz, Sherilyn C; Benito, Xavier (March 2024, Freshwater Biology)

   Tropical lakes harbour high levels of biodiversity, but the temporal and spatial variability of biological communities are still inadequately characterised, making it difficult to predict the impact of accelerated rates of environmental change in these regions. Our goal was to identify the spatiotemporal dynamics of the planktic diatom community in the Cajas Massif in the tropical Andes.We analysed seasonal diatom and environmental data over a period of 1 year from 10 lakes located in geologically distinct basins and modelled community–environment relationships using multivariate ordination and variation partitioning techniques. Generalised additive models with a full‐subset information theoretic approach also were used to determine which environmental variables explain single‐species abundance.Although the lakes are monomictic and thus have variable thermal structure across the year, seasonal variability of water chemistry conditions was negligible, and seasonal differences in diatom community composition were small. Across space, diatom community composition was correlated primarily with ionic content (divalent cations and alkalinity), related to bedrock composition, and secondly with lake thermal structure and productivity. The ionic gradient overrode the effect of the thermal structure–productivity gradient at the diatom community level, whereas individual diatom species responded more sensitively to variables related to in‐lake and catchment productivity, including chlorophyll‐aand iron, and the proportion of wetlands in the catchment.Our results indicate that the spatiotemporal variability of Cajas lakes and their diatom communities is the result of multiple intertwined environmental factors. The emergence of the ionic and thermal structure–productivity gradients in a rather small tropical lake district suggests segregation of ecological niches for diatoms that also may be important in other high‐elevation lake regions. Future studies that track tropical Andean lakes under natural and anthropogenically mediated change, both in contemporary times and in palaeoenvironmental reconstructions, would benefit from the modelling approach (community and species levels) developed here. 

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