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1. Linking Biogeochemical and Hydrodynamic Processes to Model Methane Fluxes in Shallow, Tropical Floodplain Lakes

   https://doi.org/10.1029/2022MS003385  

   Guo, Mingyang; Melack, John M; Zhou, Wencai; Barbosa, Pedro M; Amaral, Joao_H F; Zhuang, Qianlai (December 2023, Journal of Advances in Modeling Earth Systems)

   Abstract Floodplains lakes are abundant in the Amazon basin and are important methane sources to the atmosphere. Existing biogeochemical models require modifications and inclusion of hydrodynamic processes operative in shallow, warm waters to be applied to these aquatic ecosystems. We modified a 1‐dimensional process‐based, lake biogeochemical model and combined a 3‐dimensional hydrodynamic model to suit Amazon floodplains. We evaluated the combined model's performance simulating methane concentrations and fluxes and several related processes in the open lake and an embayment of a well‐studied Amazon lake. Parameters for calibration were selected through sensitivity tests using a machine learning‐based algorithm, classification, and regression trees. Comparison between simulated and measured fluxes indicate generally good agreement in seasonal patterns and magnitudes. Comparisons of near‐surface concentrations varied with no clear patterns. Simulations of methane concentrations at near‐surface and near‐bottom, and diffusive emissions are most sensitive to carbon mineralization rate, Q₁₀factors for methanogenesis and oxidation, and methane oxidation potential. Modeled rates of planktonic photosynthesis were generally lower than measurements, though simulated planktonic respiration was often similar to measurements. Simulated rates of methane oxidation were considerably lower, with a few exceptions, than measurements of methane oxidation in oxic water of the lake. Improvements of results of the linked hydrodynamic‐biogeochemical model will result from inclusion of advective transport, use of parameter values appropriate for tropical waters, especially for methane oxidation and photosynthesis, and addition of changes in hydrostatic pressure to model of ebullition. 

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2. Methane, Microbes and Models in Amazonian Floodplains: State of the Art and Perspectives

   https://doi.org/http://dx.doi.org/10.5772/intechopen.90247  

   Barros, D.J.; Bento, M.S.; Ferreira, M.S.; Carmo, J.B.; Toppa, R.H.; Neu, V.; Varesche, M.B.A.; Morais, P.B.; and Navarrete, A.A. (January 2019, Changing Ecosystems and Their Services)

   Amazon floodplain ecosystems include open water and intermittent flood forest and agricultural systems with different water types. They are a significant natural source of methane (CH4) in the tropics. When soils are flooded and become anoxic, CH4 is produced by methanogenesis, while microbially mediated aerobic and anaerobic oxidation of CH4 serves as the primary biological sink of this greenhouse gas. Measurements of rates and controls on CH4 production and emission in the Amazon basin mainly come from studies on individual wetlands and floodplain lakes. Similarly, microbial communities in those Amazon floodplain habitats have been studied on individual lakes based on sequence-specific DNA analysis. Existing biogeochemical ecosystem models of CH4 from the Amazon floodplains focus on soil properties or involve factors such as pH, redox potentials, or substrates. None of these models incorporate appropriate seasonal inundation; neither the microbiota does it as a component. In this sense, our chapter will highlight how the important efforts already contributed to understand the CH4 emission and its connections with abiotic and biotic factors in Amazon floodplains, as well as emphasize the need of encouraging cooperation and exchange of experience between research teams by using different approaches and scientific methods." 

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3. Inundation, hydrodynamics and vegetation influences carbon dioxide concentrations in Amazon floodplain lakes

   https://doi.org/10.1007/s10021-021-00692-y  

   Amaral, J.H.F.; Melack, J.M.; Barbosa, P.M.; Borges, A.V.; Kasper, D.; Cortes, A.C.; Zhou, W.; MacIntyre, S.; Forsberg, B.R. (January 2021, Ecosystems)

   Extensive floodplains and numerous lakes in the Amazon basin are well suited to examine the role of floodable lands within the context of the sources and processing of carbon within inland waters. We measured diel, seasonal and inter-annual variations of carbon dioxide concentrations and related environmental variables in open water and flooded vegetation and estimated the extension of these habitats using remote sensing in a representative central Amazon floodplain lake, Lake Janauacá. Depth-averaged values of CO2 in the open water of the lake, 157± 91 µM (mean ± SD), were less than those in an embayment near aquatic vegetation, 285±116 µM, and were variable over 24-h periods at both sites. Within floating herbaceous plant mats, mean concentration (without one outlier) was 275±77 µM and in flooded forests mean concentration was 217±78 µM. Variability in CO2 concentrations in open water resulted from changes in the extent of inundation and exchange with vegetated habitats. The best statistical model, including CO2 in aquatic plant mats, Secchi depth, rate of change in water level and chlorophyll concentrations, explained around 90% of the variability in CO2 concentration. Three-dimensional hydrodynamic modeling demonstrated that diel differences in water temperature between plant mats and open water and basin-scale motions caused lateral exchanges of CO2 linking vegetated habitats to open water. Our findings extend understanding of CO2 in tropical lakes and floodplains with measurements and models that emphasize the importance of flooded forests and aquatic herbaceous plants fringing floodplain lakes as sources of carbon dioxide to the open waters. 

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4. Large Seasonal and Habitat Differences in Methane Ebullition on the Amazon Floodplain

   https://doi.org/10.1029/2020JG005911  

   Barbosa, Pedro M.; Melack, John M.; Amaral, João H. F.; Linkhorst, Annika; Forsberg, Bruce R. (July 2021, Journal of Geophysical Research: Biogeosciences)

   Abstract Tropical floodplains are an important source of methane (CH₄) to the atmosphere, and ebullitive fluxes are likely to be important. We report direct measurements of CH₄ebullition in common habitats on the Amazon floodplain over two years based on floating chambers that allowed detection of bubbles, and submerged bubble traps. Ebullition was highly variable in space and time. Of the 840 floating chamber measurements (equivalent to 8,690 min of 10‐min deployments), 22% captured bubbles. Ebullitive CH₄fluxes, measured using bubble traps deployed for a total of approximately 230 days, ranged from 0 to 109 mmol CH₄m⁻² d⁻¹, with a mean of 4.4 mmol CH₄m⁻² d⁻¹. During falling water, a hydroacoustic echosounder detected bubbles in 24% of the 70‐m segments over 34 km. Ebullitive flux increased as the water level fell faster during falling water periods. In flooded forests, highest ebullitive fluxes occurred during falling water, while in open water and herbaceous plant habitats, higher ebullitive fluxes were measured during low water periods. The contribution of diffusive plus ebullitive CH₄flux represented by ebullition varied from 1% (high and rising water in open water of the lake) to 93% (falling water in flooded forests) based on bubble traps. Combining ebullitive and diffusive fluxes among habitats in relation to variations in water depth and areal coverage of aquatic habitats provides the basis for improved floodplain‐wide estimates of CH₄evasion. 

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5. Seasonal and spatial variability of CO2 in aquatic environments of the central lowland Amazon basin.

   https://doi.org/https://doi.org/10.1007/s10533-019-00554-9(01234567.  

   Amaral, J.H.F.; Farjalla, V.F.; Melack, J.M.; Kasper, D.; Scofield, V.; Barbosa, P.M.; Forsberg, B.R. (February 2019, Biogeochemistry)

   Different sources and processes contribute to pCO2 and CO2 exchange with the atmosphere in the rivers and floodplains of the Amazon basin. We measured or estimated pCO2, CO2 fluxes with the atmosphere, planktonic community respiration (PCR), and environmental and landscape variables along the Negro and Amazon-Solimões rivers during different periods of the fluvial hydrological cycle. Values of pCO2 ranged from 307 to 7,527 μatm, while CO2 fluxes ranged from -9.3 to 1,128 mmol m-2 d-1 in the Amazon-Solimões basin. In the Negro basin, pCO2 values ranged from 648 to 6,526 μatm, and CO2 fluxes from 35 to 1,025 mmol m-2 d-1. In a general linear model including data from Negro and Amazon-Solimões basins, seasonal and spatial variation in flooded vegetated habitat area, dissolved oxygen, depth and water temperature explained 85% of surface pCO2 variation. Levels of pCO2 varied with inundation extent, with higher pCO2 values occurring in periods with greater water depth and inundation area, and lower dissolved oxygen concentrations and water temperatures. In a separate analysis for the Amazon-Solimões river and floodplains, ecosystem type (lotic or lentic), hydrological period, water temperature, dissolved oxygen, depth and dissolved phosphorus explained 83% of pCO2 variation. Our results demonstrate the influence of alluvial floodplains and seasonal variations in their limnological characteristics on the pCO2 levels in river channels of the lowland Amazon. 

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