We consider the maximum vertex-weighted matching problem (MVM), in which non-negative weights are assigned to the vertices of a graph, and the weight of a matching is the sum of the weights of the matched vertices. Although exact algorithms for MVM are faster than exact algorithms for the maximum edge-weighted matching problem, there are graphs on which these exact algorithms could take hundreds of hours. For a natural number k, we design a k/(k + 1)approximation algorithm for MVM on non-bipartite graphs that updates the matching along certain short paths in the graph: either augmenting paths of length at most 2k + 1 or weight-increasing paths of length at most 2k. The choice of k = 2 leads to a 2/3-approximation algorithm that computes nearly optimal weights fast. This algorithm could be initialized with a 2/3-approximate maximum cardinality matching to reduce its runtime in practice. A 1/2-approximation algorithm may be obtained using k = 1, which is faster than the 2/3-approximation algorithm but it computes lower weights. The 2/3-approximation algorithm has time complexity O(Δ2m) while the time complexity of the 1/2-approximation algorithm is O(Δm), where m is the number of edges and Δ is the maximum degree of a vertex. Results from our serial implementations show that on average the 1/2-approximation algorithm runs faster than the Suitor algorithm (currently the fastest 1/2-approximation algorithm) while the 2/3-approximation algorithm runs as fast as the Suitor algorithm but obtains higher weights for the matching.
One advantage of the proposed algorithms is that they are well-suited for parallel implementation since they can process vertices to match in any order. The 1/2- and 2/3-approximation algorithms have been implemented on a shared memory parallel computer, and both approximation algorithms obtain good speedups, while the former algorithm runs faster on average than the parallel Suitor algorithm. Care is needed to design the parallel algorithm to avoid cyclic waits, and we prove that it is live-lock free.
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A Super Fast Algorithm for Estimating Sample Entropy
Sample entropy, an approximation of the Kolmogorov entropy, was proposed to characterize complexity of a time series, which is essentially defined as −log(B/A), where B denotes the number of matched template pairs with length m and A denotes the number of matched template pairs with m+1, for a predetermined positive integer m. It has been widely used to analyze physiological signals. As computing sample entropy is time consuming, the box-assisted, bucket-assisted, x-sort, assisted sliding box, and kd-tree-based algorithms were proposed to accelerate its computation. These algorithms require O(N2) or O(N2−1m+1) computational complexity, where N is the length of the time series analyzed. When N is big, the computational costs of these algorithms are large. We propose a super fast algorithm to estimate sample entropy based on Monte Carlo, with computational costs independent of N (the length of the time series) and the estimation converging to the exact sample entropy as the number of repeating experiments becomes large. The convergence rate of the algorithm is also established. Numerical experiments are performed for electrocardiogram time series, electroencephalogram time series, cardiac inter-beat time series, mechanical vibration signals (MVS), meteorological data (MD), and 1/f noise. Numerical results show that the proposed algorithm can gain 100–1000 times speedup compared to the kd-tree and assisted sliding box algorithms while providing satisfactory approximate accuracy.
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- Award ID(s):
- 1912958
- NSF-PAR ID:
- 10333650
- Date Published:
- Journal Name:
- Entropy
- Volume:
- 24
- Issue:
- 4
- ISSN:
- 1099-4300
- Page Range / eLocation ID:
- 524
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.3390/e24040524
