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1. Early Life-History Dynamics of Caribbean Octocorals: The Critical Role of Larval Supply and Partial Mortality

   https://doi.org/10.3389/fmars.2021.705563  

   Martínez-Quintana, Ángela ; Lasker, Howard R. ( September 2021 , Frontiers in Marine Science)

   Recruitment is a key demographic process for maintenance of local populations and recovery following disturbance. For marine invertebrates, distribution and abundances of recruits are impacted by spatiotemporal variation in larval supply, settlement rates and post-settlement survival. However, for colonial and modular organisms, differences in survival and growth between settlers and colonial recruits may also affect recruitment patterns. In the Caribbean, shifts in the benthic community structure favoring octocoral’s have been detected, and recruitment has been suggested as key for octocoral’s resilience. Hence, we studied octocoral recruitment dynamics, and evaluated the role of pre-settlement, settlement and post-settlement processes in recruit’s densities. We performed the study at two sites with different octocoral densities, on the south coast of St. John, United States Virgin Islands, and distinguished between processes occurring to recently settled polyps and to colonial recruits. At both sites, we monitored P. homomalla settlers on settlement tiles for 3 months, and colonial recruits of two of the most abundant genera ( Eunicea and Pseudoplexaura) for 3 years. In addition, we assessed whether recruits morphological traits affected recruitment and divided recruits of the genus Eunicea based on the presence of large calyces. The major contributor to both, single-polyps and colonial recruit densitiesmore »was larval supply. Single-polyp densities were not limited by the availability of space, settlement cues, or early post-settlement survival. Height was the only predictor of survival and growth of colonial recruits, with potential growth rates increasing with height. However, large recruits suffered partial mortality often, distorting the relationship between recruit age and size, and causing most recruits to remain in the recruit size class (≤5 cm) longer than a year. Octocorals have been resilient to the conditions that have driven the decline of scleractinian corals throughout the Caribbean, and recruitment has been key to that success. Our results are crucial to understand early life history dynamics of Caribbean octocorals, and highlights the need to standardize the definition of recruit among colonial and modular taxa to facilitate inter-specific comparisons, and to understand future changes in coral reef community assemblages.« less
2. Ocean deoxygenation and copepods: coping with oxygen minimum zone variability

   https://doi.org/10.5194/bg-17-2315-2020  

   Wishner, K.F. ; Seibel, B. ; Outram, D. ( January 2020 , Biogeosciences)

   Increasing deoxygenation (loss of oxygen) of the ocean, including expansion of oxygen minimum zones (OMZs), is a potentially important consequence of global warming. We examined present-day variability of vertical distributions of 23 calanoid copepod species in the Eastern Tropical North Pacific (ETNP) living in locations with different water column oxygen profiles and OMZ intensity (lowest oxygen concentration and its vertical extent in a profile). Copepods and hydrographic data were collected in vertically stratified day and night MOCNESS (Multiple Opening/Closing Net and Environmental Sensing System) tows (0–1000 m) during four cruises over a decade (2007– 2017) that sampled four ETNP locations: Costa Rica Dome, Tehuantepec Bowl, and two oceanic sites further north (21– 22 N) off Mexico. The sites had different vertical oxygen profiles: some with a shallow mixed layer, abrupt thermocline, and extensive very low oxygen OMZ core; and others with a more gradual vertical development of the OMZ (broad mixed layer and upper oxycline zone) and a less extensive OMZ core where oxygen was not as low. Calanoid copepod species (including examples from the genera Eucalanus, Pleuromamma, and Lucicutia) demonstrated different distributional strategies (implying different physiological characteristics) associated with this variability. We identified sets of species that (1) changedmore »their vertical distributions and depth of maximum abundance associated with the depth and intensity of the OMZ and its oxycline inflection points; (2) shifted their depth of diapause; (3) adjusted their diel vertical migration, especially the nighttime upper depth; or (4) expanded or contracted their depth range within the mixed layer and upper part of the thermocline in association with the thickness of the aerobic epipelagic zone (habitat compression concept). These distribution depths changed by tens to hundreds of meters depending on the species, oxygen profile, and phenomenon. For example, at the lower oxycline, the depth of maximum abundance for Lucicutia hulsemannae shifted from  600 to  800 m, and the depth of diapause for Eucalanus inermis shifted from  500 to  775 m, in an expanded OMZ compared to a thinner OMZ, but remained at similar low oxygen levels in both situations. These species or life stages are examples of “hypoxiphilic” taxa. For the migrating copepod Pleuromamma abdominalis, its nighttime depth was shallow ( 20 m) when the aerobic mixed layer was thin and the low-oxygen OMZ broad, but it was much deeper ( 100 m) when the mixed layer and higher oxygen extended deeper; daytime depth in both situations was  300 m. Because temperature decreased with depth, these distributional depth shifts had metabolic implications. The upper ocean to mesopelagic depth range encompasses a complex interwoven ecosystem characterized by intricate relationships among its inhabitants and their environment. It is a critically important zone for oceanic biogeochemical and export processes and hosts key food web components for commercial fisheries. Among the zooplankton, there will likely be winners and losers with increasing ocean deoxygenation as species cope with environmental change. Changes in individual copepod species abundances, vertical distributions, and life history strategies may create potential perturbations to these intricate food webs and processes. Present-day variability provides a window into future scenarios and potential effects of deoxygenation.« less
3. Microbial dynamics of elevated carbon flux in the open ocean’s abyss

   https://doi.org/10.1073/PNAS.2018269118  

   Poff, Kirsten E. ; Leu, Andy O. ; Eppley, John M. ; Karl, David M. ; DeLong, Edward F. ( January 2021 , Proceedings of the National Academy of Sciences)

   In the open ocean, elevated carbon flux (ECF) events increase the delivery of particulate carbon from surface waters to the seafloor by severalfold compared to other times of year. Since microbes play central roles in primary production and sinking particle formation, they contribute greatly to carbon export to the deep sea. Few studies, however, have quantitatively linked ECF events with the specific microbial assemblages that drive them. Here, we identify key microbial taxa and functional traits on deep-sea sinking particles that correlate positively with ECF events. Microbes enriched on sinking particles in summer ECF events included symbiotic and free-living diazotrophic cyanobacteria, rhizosolenid diatoms, phototrophic and heterotrophic protists, and photoheterotrophic and copiotrophic bacteria. Particle-attached bacteria reaching the abyss during summer ECF events encoded metabolic pathways reflecting their surface water origins, including oxygenic and aerobic anoxygenic photosynthesis, nitrogen fixation, and proteorhodopsin-based photoheterotrophy. The abundances of some deep-sea bacteria also correlated positively with summer ECF events, suggesting rapid bathypelagic responses to elevated organic matter inputs. Biota enriched on sinking particles during a spring ECF event were distinct from those found in summer, and included rhizaria, copepods, fungi, and different bacterial taxa. At other times over our 3-y study, mid- and deep-water particle colonization,more »predation, degradation, and repackaging (by deep-sea bacteria, protists, and animals) appeared to shape the biotic composition of particles reaching the abyss. Our analyses reveal key microbial players and biological processes involved in particle formation, rapid export, and consumption, that may influence the ocean’s biological pump and help sustain deep-sea ecosystems.« less
4. Microbial community structure in the western tropical South Pacific

   https://doi.org/10.5194/bg-15-3909-2018  

   Bock, Nicholas ; Van Wambeke, France ; Dion, Moïra ; Duhamel, Solange ( January 2018 , Biogeosciences)

   Abstract. Oligotrophic regions play a central role in global biogeochemical cycles, with microbial communities in these areas representing an important term in global carbon budgets. While the general structure of microbial communities has been well documented in the global ocean, some remote regions such as the western tropical South Pacific (WTSP) remain fundamentally unexplored. Moreover, the biotic and abiotic factors constraining microbial abundances and distribution remain not well resolved. In this study, we quantified the spatial (vertical and horizontal) distribution of major microbial plankton groups along a transect through the WTSP during the austral summer of 2015, capturing important autotrophic and heterotrophic assemblages including cytometrically determined abundances of non-pigmented protists (also called flagellates). Using environmental parameters (e.g., nutrients and light availability) as well as statistical analyses, we estimated the role of bottom–up and top–down controls in constraining the structure of the WTSP microbial communities in biogeochemically distinct regions. At the most general level, we found a typical tropical structure, characterized by a shallow mixed layer, a clear deep chlorophyll maximum at all sampling sites, and a deep nitracline. Prochlorococcus was especially abundant along the transect, accounting for 68±10.6% of depth-integrated phytoplankton biomass. Despite their relatively low abundances,more »picophytoeukaryotes (PPE) accounted for up to 26±11.6% of depth-integrated phytoplankton biomass, while Synechococcus accounted for only 6±6.9%. Our results show that the microbial community structure of the WTSP is typical of highly stratified regions, and underline the significant contribution to total biomass by PPE populations. Strong relationships between N₂ fixation rates and plankton abundances demonstrate the central role of N₂ fixation in regulating ecosystem processes in the WTSP, while comparative analyses of abundance data suggest microbial community structure to be increasingly regulated by bottom–up processes under nutrient limitation, possibly in response to shifts in abundances of high nucleic acid bacteria (HNA).

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5. Exploring Vitamin B1 Cycling and Its Connections to the Microbial Community in the North Atlantic Ocean

   https://doi.org/10.3389/fmars.2020.606342  

   Suffridge, Christopher P. ; Bolaños, Luis M. ; Bergauer, Kristin ; Worden, Alexandra Z. ; Morré, Jeff ; Behrenfeld, Michael J. ; Giovannoni, Stephen J. ( December 2020 , Frontiers in Marine Science)

   Vitamin B1 (thiamin) is an essential coenzyme for all cells. Recent findings from experimental cell biology and genome surveys have shown that thiamin cycling by plankton is far more complex than was previously understood. Many plankton cells cannot produce thiamin (are auxotrophic) and obligately require an exogenous source of thiamin or one or more of 5 different thiamin-related compounds (TRCs). Despite this emerging evidence for the evolution among plankton of complex interactions related to thiamin, the influence of TRCs on plankton community structure and productivity are not understood. We report measurements of three dissolved TRCs 4-amino-5-aminomethyl-2-methylpyrimidine (AmMP), 5-(2-hydroxyethyl)-4-methyl-1,3-thiazole-2-carboxylic acid (cHET), and 4-methyl-5-thiazoleethanol (HET) that have never before been assayed in seawater. Here we characterize them alongside other TRCs that were measured previously [thiamin and 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP)], in depth profiles from a latitudinal transect in the north Atlantic in March 2018. TRC concentrations ranged from femptomolar to picomolar. Surface depletion relative to a maximum near the bottom of the euphotic zone and low concentrations at deeper depths were consistent features. Our observations suggest that when bacterial abundance and production are low, TRC concentrations approach a steady state where TRC production and consumption terms are balanced. Standing stocks of TRCs also appearmore »to be positively correlated with bacterial production. However, near the period of peak biomass in the accumulation phase of a bloom we observed an inverse relationship between TRCs and bacterial production, coincident with an increased abundance of Flavobacteria that comparative genomics indicates could be vitamin B1 auxotrophs. While these observations suggest that the dissolved pool of TRCs is often at steady state, with TRC production and consumption balanced, our data suggests that bloom induced shifts in microbial community structure and activity may cause a decoupling between TRC production and consumption, leading to increased abundances of some populations of bacteria that are putatively vitamin B1 auxotrophs.« less