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1. Zooplankton Community Response to Seasonal Hypoxia: A Test of Three Hypotheses

   https://doi.org/10.3390/d12010021  

   Keister, Julie E.; Winans, Amanda K.; Herrmann, BethElLee (January 2020, Diversity)

   Several hypotheses of how zooplankton communities respond to coastal hypoxia have been put forward in the literature over the past few decades. We explored three of those that are focused on how zooplankton composition or biomass is affected by seasonal hypoxia using data collected over two summers in Hood Canal, a seasonally-hypoxic sub-basin of Puget Sound, Washington. We conducted hydrographic profiles and zooplankton net tows at four stations, from a region in the south that annually experiences moderate hypoxia to a region in the north where oxygen remains above hypoxic levels. The specific hypotheses tested were that low oxygen leads to: (1) increased dominance of gelatinous relative to crustacean zooplankton, (2) increased dominance of cyclopoid copepods relative to calanoid copepods, and (3) overall decreased zooplankton abundance and biomass at hypoxic sites compared to where oxygen levels are high. Additionally, we examined whether the temporal stability of community structure was decreased by hypoxia. We found evidence of a shift toward more gelatinous zooplankton and lower total zooplankton abundance and biomass at hypoxic sites, but no clear increase in the dominance of cyclopoid relative to calanoid copepods. We also found the lowest variance in community structure at the most hypoxic site, in contrast to our prediction. Hypoxia can fundamentally alter marine ecosystems, but the impacts differ among systems. 

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2. Using low volume eDNA methods to sample pelagic marine animal assemblages

   https://doi.org/10.1371/journal.pone.0303263  

   Dan, Michelle E; Portner, Elan J; Bowman, Jeff S; Semmens, Brice X; Owens, Sarah M; Greenwald, Stephanie M; Choy, C Anela (May 2024, PLOS ONE)

   Gorokhova, Elena (Ed.)

   Environmental DNA (eDNA) is an increasingly useful method for detecting pelagic animals in the ocean but typically requires large water volumes to sample diverse assemblages. Ship-based pelagic sampling programs that could implement eDNA methods generally have restrictive water budgets. Studies that quantify how eDNA methods perform on low water volumes in the ocean are limited, especially in deep-sea habitats with low animal biomass and poorly described species assemblages. Using 12S rRNA and COI gene primers, we quantified assemblages comprised of micronekton, coastal forage fishes, and zooplankton from low volume eDNA seawater samples (n = 436, 380–1800 mL) collected at depths of 0–2200 m in the southern California Current. We compared diversity in eDNA samples to concurrently collected pelagic trawl samples (n = 27), detecting a higher diversity of vertebrate and invertebrate groups in the eDNA samples. Differences in assemblage composition could be explained by variability in size-selectivity among methods and DNA primer suitability across taxonomic groups. The number of reads and amplicon sequences variants (ASVs) did not vary substantially among shallow (<200 m) and deep samples (>600 m), but the proportion of invertebrate ASVs that could be assigned a species-level identification decreased with sampling depth. Using hierarchical clustering, we resolved horizontal and vertical variability in marine animal assemblages from samples characterized by a relatively low diversity of ecologically important species. Low volume eDNA samples will quantify greater taxonomic diversity as reference libraries, especially for deep-dwelling invertebrate species, continue to expand. 

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3. Seasonal and interannual changes in a coastal Antarctic zooplankton community

   https://doi.org/10.3354/meps14256  

   Conroy, JA; Steinberg, DK; Thomas, MI; West, LT (February 2023, Marine Ecology Progress Series)

   Seasonal fluctuations are key features of high-latitude marine ecosystems, where zooplankton exhibit a wide array of adaptations within their life cycles. Repeated, sub-seasonal sampling of Antarctic zooplankton is rare, even along the West Antarctic Peninsula (WAP), where multidecadal changes in sea ice and phytoplankton are well documented. We quantified zooplankton biomass, size structure, and composition at 2 coastal time-series stations in the northern WAP over 3 field seasons (November-March) with different sea-ice, temperature, and phytoplankton conditions. Seasonal peaks in zooplankton biomass followed weeks after phytoplankton blooms. Biomass of mesozooplankton (0.2-2 mm) was consistent and low, while high biomass of macrozooplankton (>2 mm) occasionally resulted in a size distribution dominated by krill and salps, which appears to be a characteristic phenomenon of the Southern Ocean. Zooplankton composition and size changed between years and from spring to summer as the water column warmed after sea-ice breakup. Seasonal succession was apparent typically in decreasing zooplankton size and a shift to species that are less dependent upon phytoplankton. Mean central abundance dates varied by 54 d across 14 taxa, and specific feeding preferences and life-history traits explained the different seasonal abundance patterns. In all 3 yr, the dominant euphausiid species switched from Euphausia superba in spring to Thysanoessa macrura in late summer. Various taxa shifted their phenology between years in response to the timing of sea-ice breakup and the onset of phytoplankton productivity, a level of natural environmental variability to which they appear resilient. Nevertheless, the limits to this resilience in response to climate change remain uncertain. 

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4. The microbiome of the pelagic tunicate Dolioletta gegenbauri : A potential link between the grazing and microbial food web

   https://doi.org/10.1111/mec.16668  

   Pereira, Tiago J.; Walters, Tina L.; El‐Shaffey, Hisham M.; Bik, Holly M.; Frischer, Marc E. (September 2022, Molecular Ecology)

   Abstract Bloom‐forming gelatinous zooplankton occur circumglobally and significantly influence the structure of pelagic marine food webs and biogeochemical cycling through interactions with microbial communities. During bloom conditions especially, gelatinous zooplankton are keystone taxa that help determine the fate of primary production, nutrient remineralization, and carbon export. Using the pelagic tunicateDolioletta gegenbaurias a model system for gelatinous zooplankton, we carried out a laboratory‐based feeding experiment to investigate the potential ecosystem impacts of doliolid gut microbiomes and microbial communities associated with doliolid faecal pellets and the surrounding seawater. Metabarcoding targeting Bacteria and Archaea 16S rRNA genes/Archaea) and qPCR approaches were used to characterize microbiome assemblages. Comparison between sample types revealed distinct patterns in microbial diversity and biomass that were replicable across experiments. These observations support the hypothesis that through their presence and trophic activity, doliolids influence the structure of pelagic food webs and biogeochemical cycling in subtropical continental shelf systems where tunicate blooms are common. Bacteria associated with starved doliolids (representative of the resident gut microbiome) possessed distinct low‐biomass and low‐diversity microbial assemblages, suggesting that the doliolid microbiome is optimized to support a detrital trophic mode. Bacterial generaPseudoalteromomasandShimiawere the most abundant potential core microbiome taxa, similar to patterns observed in other marine invertebrates. Exploratory bioinformatic analyses of predicted functional genes suggest that doliolids, via their interactions with bacterial communities, may affect important biogeochemical processes including nitrogen, sulphur, and organic matter cycling. 

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5. Vertical trophic structure and niche partitioning of gelatinous predators in a pelagic food web: Insights from stable isotopes of siphonophores

   https://doi.org/10.1002/lno.12536  

   Hetherington, Elizabeth D; Close, Hilary G; Haddock, Steven_H D; Damian‐Serrano, Alejandro; Dunn, Casey W; Wallsgrove, Natalie J; Doherty, Shannon C; Choy, C Anela (April 2024, Limnology and Oceanography)

   Abstract Gelatinous zooplankton are increasingly recognized as key components of pelagic ecosystems, and there have been many recent insights into their ecology and roles in food webs. To examine the trophic ecology of siphonophores (Cnidaria, Hydrozoa), we used bulk (carbon and nitrogen) and compound‐specific (nitrogen) isotope analysis of individual amino acids (CSIA‐AA). We collected samples of 15 siphonophore genera using blue‐water diving, midwater trawls, and remotely operated vehicles in the California Current Ecosystem, from 0 to 3000 m. We examined the basal resources supporting siphonophore nutrition by comparing their isotope values to those of contemporaneously collected sinking and suspended particles (0–500 m). Stable isotope values provided novel insights into siphonophore trophic ecology, indicating considerable niche overlap between calycophoran and physonect siphonophores. However, there were clear relationships between siphonophore trophic positions and phylogeny, and the highest siphonophore trophic positions were restricted to physonects. Bulk and source amino acid nitrogen isotope (δ¹⁵N) values of siphonophores and suspended particles all increased significantly with increasing collection depth. In contrast, siphonophore trophic positions did not increase with increasing collection depth. This suggests that microbially reworked, deep, suspended particles with higher δ¹⁵N values than surface particles, likely indirectly support deep‐pelagic siphonophores. Siphonophores feed upon a range of prey, from small crustaceans to fishes, and we show that their measured trophic positions reflect this trophic diversity, spanning 1.5 trophic levels (range 2.4–4.0). Further, we demonstrate that CSIA‐AA can elucidate the feeding ecology of gelatinous zooplankton and distinguish between nutritional resources across vertical habitats. These findings improve our understanding of the functional roles of gelatinous zooplankton and energy flow through pelagic food webs. 

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