More Like this

1. The soil pore structure encountered by roots affects plant‐derived carbon inputs and fate

   https://doi.org/10.1111/nph.19159  

   Lucas, Maik; Santiago, James P.; Chen, Jinyi; Guber, Andrey; Kravchenko, Alexandra (October 2023, New Phytologist)

   Summary Plant roots are the main supplier of carbon (C) to the soil, the largest terrestrial C reservoir. Soil pore structure drives root growth, yet how it affects belowground C inputs remains a critical knowledge gap. By combining X‐ray computed tomography with 14 C plant labelling, we identified root–soil contact as a previously unrecognised influence on belowground plant C allocations and on the fate of plant‐derived C in the soil. Greater contact with the surrounding soil, when the growing root encounters a pore structure dominated by small (< 40 μm Ø) pores, results in strong rhizodeposition but in areas of high microbial activity. The root system of Rudbeckia hirta revealed high plasticity and thus maintained high root–soil contact. This led to greater C inputs across a wide range of soil pore structures. The root–soil contact Panicum virgatum , a promising bioenergy feedstock crop, was sensitive to the encountered structure. Pore structure built by a polyculture, for example, restored prairie, can be particularly effective in promoting lateral root growth and thus root–soil contact and associated C benefits. The findings suggest that the interaction of pore structure with roots is an important, previously unrecognised, stimulus of soil C gains. 

   more » « less
2. Changes in soil pore structure generated by the root systems of maize, sorghum and switchgrass affect in situ N2O emissions and bacterial denitrification

   https://doi.org/10.1007/s00374-023-01761-1  

   Lucas, Maik; Gil, J.; Robertson, G. P.; Ostrom, N. E.; Kravchenko, A. (August 2023, Biology and Fertility of Soils)

   Abstract Due to the heterogeneous nature of soil pore structure, processes such as nitrification and denitrification can occur simultaneously at microscopic levels, making prediction of small-scale nitrous oxide (N 2 O) emissions in the field notoriously difficult. We assessed N 2 O+N 2 emissions from soils under maize ( Zea mays L .) , switchgrass ( Panicum virgatum L.), and energy sorghum ( Sorghum bicolor L.), three potential bioenergy crops in order to identify the importance of different N 2 O sources to microsite production, and relate N 2 O source differences to crop-associated differences in pore structure formation. The combination of isotopic surveys of N 2 O in the field during one growing season and X-ray computed tomography (CT) enabled us to link results from isotopic mappings to soil structural properties. Further, our methodology allowed us to evaluate the potential for in situ N 2 O suppression by biological nitrification inhibition (BNI) in energy sorghum. Our results demonstrated that the fraction of N 2 O originating from bacterial denitrification and reduction of N 2 O to N 2 is largely determined by the volume of particulate organic matter occluded within the soil matrix and the anaerobic soil volume. Bacterial denitrification was greater in switchgrass than in the annual crops, related to changes in pore structure caused by the coarse root system. This led to high N-loses through N 2 emissions in the switchgrass system throughout the season a novel finding given the lack of data in the literature for total denitrification. Isotopic mapping indicated no differences in N 2 O-fluxes or their source processes between maize and energy sorghum that could be associated with the release of BNI by the investigated sorghum variety. The results of this research show how differences in soil pore structures among cropping systems can determine both N 2 O production via denitrification and total denitrification N losses in situ. 

   more » « less
3. Plant diversity and grasses increase root biomass in a rainfall and grassland diversity manipulation

   https://doi.org/10.3389/fevo.2023.1259809  

   Podzikowski, Laura Y.; Heffernan, Megan M.; Bever, James D. (November 2023, Frontiers in Ecology and Evolution)

   The loss of plant productivity with declining diversity is well established, exceeding other global change drivers including drought. These patterns are most clearly established for aboveground productivity, it remains poorly understood whether productivity increases associated with diversity are replicated belowground. To address this gap, we established a plant diversity-manipulation experiment in 2018. It is a full factorial manipulation of plant species richness and community composition, and precipitation. Three and five years post-establishment, two bulk soil cores (20cm depth) were collected and composited from each plot and were processed for roots to determine belowground biomass as root standing crop. We observed a strong positive relationship between richness and aboveground production and belowground biomass, generating positive combined above and belowground with diversity. Root standing crop increased 1.4-fold from years three to five. Grass communities produced more root biomass (monoculture mean 463.9 ± 410.3g m⁻²), and the magnitude of the relationship between richness and root standing crop was greatest within those communities. Legume communities produced the fewest roots (monoculture mean 212.2 ± 155.1g m⁻²), and belowground standing crop was not affected by diversity. Root standing crops in year three were 1.8 times higher under low precipitation conditions, while in year five we observed comparable root standing crops between precipitation treatments. Plant family was a strong mediator of increased belowground biomass observed with diversity, with single family grass and aster families generating 1.7 times greater root standing crops in six compared to single species communities, relationships between diversity and aboveground production were consistently observed in both single-family and multiple family communities. Diverse communities with species from multiple families generated only 1.3 times the root standing crop compared to monoculture average root biomass. We surprisingly observe diverse single family communities can generate increases in root standing crops that exceed those generated by diverse multiple family communities, highlighting the importance of plant richness within plant family for a given community. These patterns have potential implications for understanding the interactions of multiple global change drivers as changes in both precipitation and plant community composition do alter whether plant production aboveground is translated belowground biomass. 

   more » « less
4. Pore architecture and particulate organic matter in soils under monoculture switchgrass and restored prairie in contrasting topography

   https://doi.org/10.1038/s41598-021-01533-7  

   Juyal, Archana; Guber, Andrey; Oerther, Maxwell; Quigley, Michelle; Kravchenko, Alexandra (December 2021, Scientific Reports)

   Abstract Bioenergy cropping systems can substantially contribute to climate change mitigation. However, limited information is available on how they affect soil characteristics, including pores and particulate organic matter (POM), both essential components of the soil C cycle. The objective of this study was to determine effects of bioenergy systems and field topography on soil pore characteristics, POM, and POM decomposition under new plant growth. We collected intact soil cores from two systems: monoculture switchgrass ( Panicum virgatum L.) and native prairie, at two contrasting topographical positions (depressions and slopes), planting half of the cores with switchgrass. Pore and POM characteristics were obtained using X-ray computed micro-tomography (μCT) (18.2 µm resolution) before and after new switchgrass growth. Diverse prairie vegetation led to higher soil C than switchgrass, with concomitantly higher volumes of 30–90 μm radius pores and greater solid-pore interface. Yet, that effect was present only in the coarse-textured soils on slopes and coincided with higher root biomass of prairie vegetation. Surprisingly, new switchgrass growth did not intensify decomposition of POM, but even somewhat decreased it in monoculture switchgrass as compared to non-planted controls. Our results suggest that topography can play a substantial role in regulating factors driving C sequestration in bioenergy systems. 

   more » « less
5. DIRT/3D: 3D root phenotyping for field-grown maize ( Zea mays )

   https://doi.org/10.1093/plphys/kiab311  

   Liu, Suxing; Barrow, Carlos Sherard; Hanlon, Meredith; Lynch, Jonathan P.; Bucksch, Alexander (July 2021, Plant Physiology)

   Abstract The development of crops with deeper roots holds substantial promise to mitigate the consequences of climate change. Deeper roots are an essential factor to improve water uptake as a way to enhance crop resilience to drought, to increase nitrogen capture, to reduce fertilizer inputs, and to increase carbon sequestration from the atmosphere to improve soil organic fertility. A major bottleneck to achieving these improvements is high-throughput phenotyping to quantify root phenotypes of field-grown roots. We address this bottleneck with Digital Imaging of Root Traits (DIRT)/3D, an image-based 3D root phenotyping platform, which measures 18 architecture traits from mature field-grown maize (Zea mays) root crowns (RCs) excavated with the Shovelomics technique. DIRT/3D reliably computed all 18 traits, including distance between whorls and the number, angles, and diameters of nodal roots, on a test panel of 12 contrasting maize genotypes. The computed results were validated through comparison with manual measurements. Overall, we observed a coefficient of determination of r2>0.84 and a high broad-sense heritability of Hmean2> 0.6 for all but one trait. The average values of the 18 traits and a developed descriptor to characterize complete root architecture distinguished all genotypes. DIRT/3D is a step toward automated quantification of highly occluded maize RCs. Therefore, DIRT/3D supports breeders and root biologists in improving carbon sequestration and food security in the face of the adverse effects of climate change. 

   more » « less