More Like this

1. Molecular phylogeny of the tribe Candalidini (Lepidoptera: Lycaenidae): systematics, diversification and evolutionary history

   https://doi.org/10.1111/syen.12432  

   Braby, Michael F. ; Espeland, Marianne ; Müller, Chris J. ; Eastwood, Rod ; Lohman, David J. ; Kawahara, Akito Y. ; Maunsell, Sarah C. ; Pierce, Naomi E. ( June 2020 , Systematic Entomology)

   The butterfly tribe Candalidini is geographically restricted to Australia and mainland New Guinea and its adjacent islands. With 60 species and subspecies, it represents a large radiation of Papilionoidea in the Australian region. Although the species‐level taxonomy is relatively well understood, the number of genera is uncertain, varying from two to eight. We reconstructed the phylogeny of the Candalidini based on a 13‐locus hybrid enrichment probe set (12.8 Kbp: COI, Thiolase, CAD, CAT, DDC, EF1‐a, GAPDH, HCL, IDH, MDH, RPS2, RPS5, Wingless), including all previously recognized genera and 76% (28/37) of the species‐level diversity of the tribe. Maximum likelihood analysis recovered the Candalidini as a strongly supported monophyletic group. In conjunction with morphological characters, the phylogeny provided a robust framework for a revised classification in which we recognize four genera, 37 species and 23 subspecies. The genusNesolycaenaWaterhouse & R.E. Turner is considered in synonymy withCandalidesHübner, and four other genera are not recognized, namely,HolochilaC. Felder,AdalumaTindale,ZetonaWaterhouse andMicroscenaTite. Of the four valid genera, theabsimilisgroup (23 species) is placed in the newly described genusEirmocidesBraby, Espeland & Müllergen. nov.(type speciesCandalides consimilisWaterhouse). Theerinusgroup (six species) is assigned toErinaSwainson, which is reinstated.Chrysophanus cyprotusOlliff is assigned toCyprotidesTite, which is also reinstated as a monotypic genus. The remaining seven species are placed inCandalides sensu stricto. Overall, we propose 47 new nomenclatural changes at the species and subspecies levels, including the synonymy ofHolochila biakaTite asEirmocides tringa biaka(Tite)syn. nov. et comb. nov.and recognition ofCandalides hyacinthinus gilesiM.R. Williams & Bollam as a distinct speciesErina gilesi(M.R. Williams & Bollamstat. rev. et comb. nov.A dated phylogeny using Bayesian inference in BEAST2 and biogeographical and habitat analyses based on the DEC model in BioGeoBEARS indicated that the ancestor of the Candalidini most likely evolved in rainforest habitats of the mesic biome in situ on the Australian plate of Southern Gondwana during the Eocene (c. 43 Ma). A major period of diversification occurred in the Miocene, which coincided with aridification of the Australian continent, followed by a further episode of radiation in montane New Guinea during the Plio‐Pleistocene.

   This published work has been registered on ZooBank by the authors: Michael Braby:http://zoobank.org/urn:lsid:zoobank.org:author:4D3A7605‐EBD0‐40F6‐A5F2‐7F67F59E3D60;

   Marianne Espeland:http://zoobank.org/urn:lsid:zoobank.org:author:00D6F9F9‐3902‐4A8B‐846F‐720AB32922A6;

   Chris Müller:http://zoobank.org/urn:lsid:zoobank.org:author:15FE5F26‐7596‐46C2‐9697‐1FD92A692D0D;

   http://zoobank.org/urn:lsid:zoobank.org:pub:47D5CA34‐C294‐4FBD‐84B6‐1C2A82B7CADF.

    

   more » « less
2. Complex histories of gene flow and a mitochondrial capture event in a nonsister pair of birds

   https://doi.org/10.1111/mec.15856  

   Andersen, Michael J. ; McCullough, Jenna M. ; Gyllenhaal, Ethan F. ; Mapel, Xena M. ; Haryoko, Tri ; Jønsson, Knud A. ; Joseph, Leo ( March 2021 , Molecular Ecology)

   Hybridization, introgression, and reciprocal gene flow during speciation, specifically the generation of mitonuclear discordance, are increasingly observed as parts of the speciation process. Genomic approaches provide insight into where, when, and how adaptation operates during and after speciation and can measure historical and modern introgression. Whether adaptive or neutral in origin, hybridization can cause mitonuclear discordance by placing the mitochondrial genome of one species (or population) in the nuclear background of another species. The latter, introgressed species may eventually have its own mtDNA replaced or “captured” by other species across its entire geographical range. Intermediate stages in the capture process should be observable. Two nonsister species of Australasian monarch‐flycatchers, Spectacled Monarch (Symposiachrus trivirgatus) mostly of Australia and Indonesia and Spot‐winged Monarch (S. guttula) of New Guinea, present an opportunity to observe this process. We analysed thousands of single nucleotide polymorphisms (SNPs) derived from ultraconserved elements of all subspecies of both species. Mitochondrial DNA sequences of Australian populations ofS. trivirgatusform two paraphyletic clades, one being sister to and presumably introgressed byS. guttuladespite little nuclear signal of introgression. Population genetic analyses (e.g., tests for modern and historical gene flow and selection) support at least one historical gene flow event betweenS. guttulaand AustralianS. trivirgatus. We also uncovered introgression from the Maluku Islands subspecies ofS. trivirgatusinto an island population ofS. guttula, resulting in apparent nuclear paraphyly. We find that neutral demographic processes, not adaptive introgression, are the most likely cause of these complex population histories. We suggest that a Pleistocene extinction ofS. guttulafrom mainland Australia resulted from range expansion byS. trivirgatus.

    

   more » « less
3. Habitat use and seed removal by invasive rats ( Rattus rattus ) in disturbed and undisturbed rain forest, Puerto Rico

   https://doi.org/10.1111/btp.12640  

   Shiels, Aaron B. ; Ramírez de Arellano, Gabriela E. ( March 2019 , Biotropica)

   Despite frequent occurrences of invasive rats (Rattusspp.) on islands, their known effects on forests are limited. Where invasive rats have been studied, they generally have significant negative impacts on native plants, birds, and other animals. This study aimed to determine invasive rat distribution and effects on native plant populations via short‐term seed removal trials in tropical rain forest habitats in the Luquillo Experimental Forest, Puerto Rico. To address the first objective, we used tracking tunnels (inked and baited cards inside tunnels enabling animal visitors’ footprints to be identified) placed on the ground and in the lower canopy within disturbed (treefall gaps, hurricane plots, stream edges) and undisturbed (continuous forest) habitats. We found that rats are present in all habitats tested. Secondly, we compared seed removal of four native tree species (Guarea guidonia,Buchenavia capitata, Tetragastris balsamifera,andPrestoea acuminata) between vertebrate‐excluded and free‐access treatments in the same disturbed and undisturbed habitats. Trail cameras were used to identify animals responsible for seed contact and removal. Black rats (Rattus rattus) were responsible for 65.1% of the interactions with seeds, of which 28.6% were confirmed seed removals. Two plant species had significantly more seeds removed in disturbed (gaps) than undisturbed forest.Prestoea acuminatahad the lowest seed removal (9% in 10 days), whereas all other species had >30% removal. Black rats are likely influencing fates of seeds on the forest floor, and possibly forest community composition, through dispersal or predation. Further understanding of rat–plant interactions may be useful for formulating conservation strategies.

    

   more » « less
4. The hidden legacy of megafaunal extinction: Loss of functional diversity and resilience over the Late Quaternary at Hall’s Cave

   https://doi.org/10.1111/geb.13428  

   Hedberg, Carson P. ; Lyons, S. Kathleen ; Smith, Felisa A. ; Schrodt, ed., Franziska ( November 2021 , Global Ecology and Biogeography)

   Functional traits mediate the interactions of species among themselves and with their environment, providing a link between diversity and ecosystem function. Crucially, the loss of biodiversity can jeopardize the functionality of ecosystems. Much focus is on predicting the impacts of current and future species loss; however, modern ecosystems have undergone biodiversity decline throughout the Late Quaternary, starting with the Pleistocene megafaunal extinctions. Thus, the fossil record offers the opportunity to investigate the long‐term legacy of biodiversity erosion and how this is affecting modern ecosystems in a cumulative manner. We aimed to investigate changes in functional diversity and redundancy of a local mammal community at Hall’s Cave, a site with a continuous record from 21,000 years ago to the present. Additionally, we included several common introduced species in the modern community to test whether they restore some lost ecological function.

   Central Texas.

   Late Pleistocene to Present.

   Mammals.

   We used eight functional traits (mass, diet, arboreality, cursoriality, soil disturbance, group size, activity period and migration habit), which, collectively, describe the ecological role of a species and its influence on ecosystem processes, to construct a multidimensional functional space. The functional richness, range and distribution of the Hall’s Cave community and the degree of functional redundancy were characterized statistically over time.

   We found that declines in functional diversity were greater than expected given the decrease in species richness, implying that lost taxa contributed higher than average distinct ecological function. Functional distances between the remaining species increased through time, leading to reduced functional redundancy in younger communities. However, recently introduced taxa increased functional diversity to levels similar to those in the Holocene and partly restored the functional space occupied by Late Pleistocene fauna.

   Our local‐scale analysis demonstrates how prolonged biodiversity erosion not only leads to functionally depauperate communities, but, crucially, lowers ecological resilience to future disturbance.

    

   more » « less
5. Long-Term Community Dynamics Reveal Different Trajectories for Two Mid-Atlantic Maritime Forests

   https://doi.org/10.3390/f12081063  

   Woods, Natasha N. ; Tuley, Philip A. ; Zinnert, Julie C. ( August 2021 , Forests)

   null (Ed.)

   Maritime forests are threatened by sea-level rise, storm surge and encroachment of salt-tolerant species. On barrier islands, these forested communities must withstand the full force of tropical storms, hurricanes and nor’easters while the impact is reduced for mainland forests protected by barrier islands. Geographic position may account for differences in maritime forest resilience to disturbance. In this study, we quantify two geographically distinct maritime forests protected by dunes on Virginia’s Eastern Shore (i.e., mainland and barrier island) at two time points (15 and 21 years apart, respectively) to determine whether the trajectory is successional or presenting evidence of disassembly with sea-level rise and storm exposure. We hypothesize that due to position on the landscape, forest disassembly will be higher on the barrier island than mainland as evidenced by reduction in tree basal area and decreased species richness. Rate of relative sea-level rise in the region was 5.9 ± 0.7 mm yr−1 based on monthly mean sea-level data from 1975 to 2017. Savage Neck Dunes Natural Area Preserve maritime forest was surveyed using the point quarter method in 2003 and 2018. Parramore Island maritime forest was surveyed in 1997 using 32 m diameter circular plots. As the island has been eroding over the past two decades, 2016 Landsat imagery was used to identify remaining forested plots prior to resurveying. In 2018, only plots that remained forested were resurveyed. Lidar was used to quantify elevation of each point/plot surveyed in 2018. Plot elevation at Savage Neck was 1.93 ± 0.02 m above sea level, whereas at Parramore Island, elevation was lower at 1.04 ± 0.08 m. Mainland dominant species, Acer rubrum, Pinus taeda, and Liquidambar styraciflua, remained dominant over the study period, with a 14% reduction in the total number of individuals recorded. Basal area increased by 11%. Conversely, on Parramore Island, 33% of the former forested plots converted to grassland and 33% were lost to erosion and occur as ghost forest on the shore or were lost to the ocean. Of the remaining forested plots surveyed in 2018, dominance switched from Persea palustris and Juniperus virginiana to the shrub Morella cerifera. Only 46% of trees/shrubs remained and basal area was reduced by 84%. Shrub basal area accounted for 66% of the total recorded in 2018. There are alternative paths to maritime forest trajectory which differ for barrier island and mainland. Geographic position relative to disturbance and elevation likely explain the changes in forest community composition over the timeframes studied. Protected mainland forest at Savage Neck occurs at higher mean elevation and indicates natural succession to larger and fewer individuals, with little change in mixed hardwood-pine dominance. The fronting barrier island maritime forest on Parramore Island has undergone rapid change in 21 years, with complete loss of forested communities to ocean or conversion to mesic grassland. Of the forests remaining, dominant evergreen trees are now being replaced with the expanding evergreen shrub, Morella cerifera. Loss of biomass and basal area has been documented in other low elevation coastal forests. Our results indicate that an intermediate shrub state may precede complete loss of woody communities in some coastal communities, providing an alternative mechanism of resilience. 

   more » « less