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1. Diversity, taxonomic composition, and functional aspects of fungal communities in living, senesced, and fallen leaves at five sites across North America

   https://doi.org/10.7717/peerj.2768  

   U’Ren, Jana M. ; Arnold, A. Elizabeth ( December 2016 , PeerJ)

   Fungal endophytes inhabit symptomless, living tissues of all major plant lineages to form one of earth’s most prevalent groups of symbionts. Many reproduce from senesced and/or decomposing leaves and can produce extracellular leaf-degrading enzymes, blurring the line between symbiotrophy and saprotrophy. To better understand the endophyte–saprotroph continuum we compared fungal communities and functional traits of focal strains isolated from living leaves to those isolated from leaves after senescence and decomposition, with a focus on foliage of woody plants in five biogeographic provinces ranging from tundra to subtropical scrub forest.

   We cultured fungi from the interior of surface-sterilized leaves that were living at the time of sampling (i.e., endophytes), leaves that were dead and were retained in plant canopies (dead leaf fungi, DLF), and fallen leaves (leaf litter fungi, LLF) from 3–4 species of woody plants in each of five sites in North America. Our sampling encompassed 18 plant species representing two families of Pinophyta and five families of Angiospermae. Diversity and composition of fungal communities within and among leaf life stages, hosts, and sites were compared using ITS-partial LSU rDNA data. We evaluated substrate use and enzyme activity by a subset of fungi isolated only from living tissues vs. fungi isolated only from non-living leaves.

   Across the diverse biomes and plant taxa surveyed here, culturable fungi from living leaves were isolated less frequently and were less diverse than those isolated from non-living leaves. Fungal communities in living leaves also differed detectably in composition from communities in dead leaves and leaf litter within focal sites and host taxa, regardless of differential weighting of rare and abundant fungi. All focal isolates grew on cellulose, lignin, and pectin as sole carbon sources, but none displayed ligninolytic or pectinolytic activityin vitro. Cellulolytic activity differed among fungal classes. Within Dothideomycetes, activity differed significantly between fungi from living vs. non-living leaves, but such differences were not observed in Sordariomycetes.

   Although some fungi with endophytic life stages clearly persist for periods of time in leaves after senescence and incorporation into leaf litter, our sampling across diverse biomes and host lineages detected consistent differences between fungal assemblages in living vs. non-living leaves, reflecting incursion by fungi from the leaf exterior after leaf death and as leaves begin to decompose. However, fungi found only in living leaves do not differ consistently in cellulolytic activity from those fungi detected thus far only in dead leaves. Future analyses should consider Basidiomycota in addition to the Ascomycota fungi evaluated here, and should explore more dimensions of functional traits and persistence to further define the endophytism-to-saprotrophy continuum.

    

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2. Variation in Fine Root Characteristics and Nutrient Dynamics Across Alaskan Ecosystems

   https://doi.org/10.1007/s10021-020-00583-8  

   McCulloch, Lindsay A. ; Kropp, Heather ; Kholodov, Alexander ; Cardelús, Catherine L. ; Natali, Susan M. ; Loranty, Michael M. ( November 2020 , Ecosystems)

   null (Ed.)

   Carbon cycle perturbations in high-latitude ecosystems associated with rapid warming can have implications for the global climate. Belowground biomass is an important component of the carbon cycle in these ecosystems, with, on average, significantly more vegetation biomass belowground than aboveground. Large quantities of dead root biomass are also in these ecosystems owing to slow decomposition rates. Current understanding of how live and dead root biomass carbon pools vary across highlatitude ecosystems and the environmental conditions associated with this variation is limited due to the labor- and time-intensive nature of data collection. To that end, we examined patterns and factors (abiotic and biotic) associated with the variation in live and dead fine root biomass (FRB) and FRB carbon (C), nitrogen (N) and phosphorus concentrations for 23 sites across a latitudinal gradient in Alaska, spanning both boreal forest and tundra biomes. We found no difference in the live or dead FRB variables between these biomes, despite large differences in predominant vegetation types, except for significantly higher live FRB C:N ratios in boreal sites. Soil C:N ratio, moisture, and temperature, along with moss cover, explained a substantial portion of the dead:live FRB ratio variability across sites. We find all these factors have negative relationships with dead FRB, while having positive or no relationship with live FRB. This work demonstrates that FRB does not necessarily correlate with aboveground vegetation characteristics, and it highlights the need for finer-scale measurements of abiotic and biotic factors to understand FRB landscape variability now and into the future. 

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3. Drivers of wood decay in tropical ecosystems: Termites versus microbes along spatial, temporal and experimental precipitation gradients

   https://doi.org/10.1111/1365-2435.14494  

   Wijas, Baptiste J. ; Flores‐Moreno, Habacuc ; Allison, Steven D. ; Rodriguez, Luciana Chavez ; Cheesman, Alexander W. ; Cernusak, Lucas A. ; Clement, Rebecca ; Cornwell, Will K. ; Duan, Elizabeth S. ; Eggleton, Paul ; et al ( January 2024 , Functional Ecology)

   Models estimating decomposition rates of dead wood across space and time are mainly based on studies carried out in temperate zones where microbes are dominant drivers of decomposition. However, most dead wood biomass is found in tropical ecosystems, where termites are also important wood consumers. Given the dependence of microbial decomposition on moisture with termite decomposition thought to be more resilient to dry conditions, the relative importance of these decomposition agents is expected to shift along gradients in precipitation that affect wood moisture.

   Here, we investigated the relative roles of microbes and termites in wood decomposition across precipitation gradients in space, time and with a simulated drought experiment in tropical Australia. We deployed mesh bags with non‐native pine wood blocks, allowing termite access to half the bags. Bags were collected every 6 months (end of wet and dry seasons) over a 4‐year period across five sites along a rainfall gradient (ranging from savanna to wet sclerophyll to rainforest) and within a simulated drought experiment at the wettest site. We expected microbial decomposition to proceed faster in wet conditions with greater relative influence of termites in dry conditions.

   Consistent with expectations, microbial‐mediated wood decomposition was slowest in dry savanna sites, dry seasons and simulated drought conditions. Wood blocks discovered by termites decomposed 16–36% faster than blocks undiscovered by termites regardless of precipitation levels. Concurrently, termites were 10 times more likely to discover wood in dry savanna compared with wet rainforest sites, compensating for slow microbial decomposition in savannas. For wood discovered by termites, seasonality and drought did not significantly affect decomposition rates.

   Taken together, we found that spatial and seasonal variation in precipitation is important in shaping wood decomposition rates as driven by termites and microbes, although these different gradients do not equally impact decomposition agents. As we better understand how climate change will affect precipitation regimes across the tropics, our results can improve predictions of how wood decomposition agents will shift with potential for altering carbon fluxes.

   Read the freePlain Language Summaryfor this article on the Journal blog.

    

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4. Fine root dynamics across pantropical rainforest ecosystems

   https://doi.org/10.1111/gcb.15677  

   Huaraca Huasco, Walter ; Riutta, Terhi ; Girardin, Cécile A. J. ; Hancco Pacha, Fernando ; Puma Vilca, Beisit L. ; Moore, Sam ; Rifai, Sami W. ; del Aguila‐Pasquel, Jhon ; Araujo Murakami, Alejandro ; Freitag, Renata ; et al ( May 2021 , Global Change Biology)

   Fine roots constitute a significant component of the net primary productivity (NPP) of forest ecosystems but are much less studied than aboveground NPP. Comparisons across sites and regions are also hampered by inconsistent methodologies, especially in tropical areas. Here, we present a novel dataset of fine root biomass, productivity, residence time, and allocation in tropical old‐growth rainforest sites worldwide, measured using consistent methods, and examine how these variables are related to consistently determined soil and climatic characteristics. Our pantropical dataset spans intensive monitoring plots in lowland (wet, semi‐deciduous, and deciduous) and montane tropical forests in South America, Africa, and Southeast Asia (n = 47). Large spatial variation in fine root dynamics was observed across montane and lowland forest types. In lowland forests, we found a strong positive linear relationship between fine root productivity and sand content, this relationship was even stronger when we considered the fractional allocation of total NPP to fine roots, demonstrating that understanding allocation adds explanatory power to understanding fine root productivity and total NPP. Fine root residence time was a function of multiple factors: soil sand content, soil pH, and maximum water deficit, with longest residence times in acidic, sandy, and water‐stressed soils. In tropical montane forests, on the other hand, a different set of relationships prevailed, highlighting the very different nature of montane and lowland forest biomes. Root productivity was a strong positive linear function of mean annual temperature, root residence time was a strong positive function of soil nitrogen content in montane forests, and lastly decreasing soil P content increased allocation of productivity to fine roots. In contrast to the lowlands, environmental conditions were a better predictor for fine root productivity than for fractional allocation of total NPP to fine roots, suggesting that root productivity is a particularly strong driver of NPP allocation in tropical mountain regions.

    

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5. Plastic responses to hot temperatures homogenize riparian leaf litter, speed decomposition, and reduce detritivores

   https://doi.org/10.1002/ecy.3461  

   Jeplawy, Joann R. ; Cooper, Hillary F. ; Marks, Jane ; Lindroth, Richard L. ; Andrews, Morgan I. ; Compson, Zacchaeus G. ; Gehring, Catherine ; Hultine, Kevin R. ; Grady, Kevin ; Whitham, Thomas G. ; et al ( August 2021 , Ecology)

   Efforts to maintain the function of critical ecosystems under climate change often begin with foundation species. In the southwestern United States, cottonwood trees support diverse communities in riparian ecosystems that are threatened by rising temperatures. Genetic variation within cottonwoods shapes communities and ecosystems, but these effects may be modified by phenotypic plasticity, where genotype traits change in response to environmental conditions. Here, we investigated plasticity in Fremont cottonwood (Populus fremontii) leaf litter traits as well as the consequences of plasticity for riparian ecosystems. We used three common gardens each planted with genotypes from six genetically divergent populations spanning a 12°C temperature gradient, and a decomposition experiment in a common stream environment. We found that leaf litter area, specific leaf area, and carbon to nitrogen ratio (C:N) were determined by interactions between genetics and growing environment, as was the subsequent rate of litter decomposition. Most of the genetic variation in leaf litter traits appeared among rather than within source populations with distinct climate histories. Source populations from hotter climates generally produced litter that decomposed more quickly, but plasticity varied the magnitude of this effect. We also found that hotter growing conditions reduced the variation in litter traits produced across genotypes, homogenizing the litter inputs to riparian ecosystems. All genotypes in the hottest garden produced comparatively small leaves that decomposed quickly and supported lower abundances of aquatic invertebrates, whereas the same genotypes in the coldest garden produced litter with distinct morphologies and decomposition rates. Our results suggest that plastic responses to climate stress may constrict the expression of genetic variation in predictable ways that impact communities and ecosystems. Understanding these interactions between genetic and environmental variation is critical to our ability to plan for the role of foundation species when managing and restoring riparian ecosystems in a warming world.

    

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