An official website of the United States government
Abstract Decoding sensory stimuli from neural activity can provide insight into how the nervous system might interpret the physical environment, and facilitates the development of brain-machine interfaces. Nevertheless, the neural decoding problem remains a significant open challenge. Here, we present an efficient nonlinear decoding approach for inferring natural scene stimuli from the spiking activities of retinal ganglion cells (RGCs). Our approach uses neural networks to improve on existing decoders in both accuracy and scalability. Trained and validated on real retinal spike data from more than 1000 simultaneously recorded macaque RGC units, the decoder demonstrates the necessity of nonlinear computations for accurate decoding of the fine structures of visual stimuli. Specifically, high-pass spatial features of natural images can only be decoded using nonlinear techniques, while low-pass features can be extracted equally well by linear and nonlinear methods. Together, these results advance the state of the art in decoding natural stimuli from large populations of neurons.
more »
« less
Revealing nonlinear neural decoding by analyzing choices
Abstract Sensory data about most natural task-relevant variables are entangled with task-irrelevant nuisance variables. The neurons that encode these relevant signals typically constitute a nonlinear population code. Here we present a theoretical framework for quantifying how the brain uses or decodes its nonlinear information. Our theory obeys fundamental mathematical limitations on information content inherited from the sensory periphery, describing redundant codes when there are many more cortical neurons than primary sensory neurons. The theory predicts that if the brain uses its nonlinear population codes optimally, then more informative patterns should be more correlated with choices. More specifically, the theory predicts a simple, easily computed quantitative relationship between fluctuating neural activity and behavioral choices that reveals the decoding efficiency. This relationship holds for optimal feedforward networks of modest complexity, when experiments are performed under natural nuisance variation. We analyze recordings from primary visual cortex of monkeys discriminating the distribution from which oriented stimuli were drawn, and find these data are consistent with the hypothesis of near-optimal nonlinear decoding.
more »
« less
- Award ID(s):
- 1707400
- PAR ID:
- 10380460
- Date Published:
- Journal Name:
- Nature Communications
- Volume:
- 12
- Issue:
- 1
- ISSN:
- 2041-1723
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Natural behaviors occur in closed action-perception loops and are supported by dynamic and flexible beliefs abstracted away from our immediate sensory milieu. How this real-world flexibility is instantiated in neural circuits remains unknown. Here, we have male macaques navigate in a virtual environment by primarily leveraging sensory (optic flow) signals, or by more heavily relying on acquired internal models. We record single-unit spiking activity simultaneously from the dorsomedial superior temporal area (MSTd), parietal area 7a, and the dorso-lateral prefrontal cortex (dlPFC). Results show that while animals were able to maintain adaptive task-relevant beliefs regardless of sensory context, the fine-grain statistical dependencies between neurons, particularly in 7a and dlPFC, dynamically remapped with the changing computational demands. In dlPFC, but not 7a, destroying these statistical dependencies abolished the area’s ability for cross-context decoding. Lastly, correlational analyses suggested that the more unit-to-unit couplings remapped in dlPFC, and the less they did so in MSTd, the less were population codes and behavior impacted by the loss of sensory evidence. We conclude that dynamic functional connectivity between neurons in prefrontal cortex maintain a stable population code and context-invariant beliefs during naturalistic behavior.more » « less
-
Many theories assume that a sensory neuron’s higher firing rate indicates a greater probability of its preferred stimulus. However, this contradicts 1) the adaptation phenomena where prolonged exposure to, and thus increased probability of, a stimulus reduces the firing rates of cells tuned to the stimulus; and 2) the observation that unexpected (low probability) stimuli capture attention and increase neuronal firing. Other theories posit that the brain builds predictive/efficient codes for reconstructing sensory inputs. However, they cannot explain that the brain preserves some information while discarding other. We propose that in sensory areas, projection neurons’ firing rates are proportional to optimal code length (i.e., negative log estimated probability), and their spike patterns are the code, for useful features in inputs. This hypothesis explains adaptation-induced changes of V1 orientation tuning curves, and bottom-up attention. We discuss how the modern minimum-description-length (MDL) principle may help understand neural codes. Because regularity extraction is relative to a model class (defined by cells) via its optimal universal code (OUC), MDL matches the brain’s purposeful, hierarchical processing without input reconstruction. Such processing enables input compression/understanding even when model classes do not contain true models. Top-down attention modifies lower-level OUCs via feedback connections to enhance transmission of behaviorally relevant information. Although OUCs concern lossless data compression, we suggest possible extensions to lossy, prefix-free neural codes for prompt, online processing of most important aspects of stimuli while minimizing behaviorally relevant distortion. Finally, we discuss how neural networks might learn MDL’s normalized maximum likelihood (NML) distributions from input data.more » « less
-
Jonathan R. Whitlock (Ed.)IntroductionUnderstanding the neural code has been one of the central aims of neuroscience research for decades. Spikes are commonly referred to as the units of information transfer, but multi-unit activity (MUA) recordings are routinely analyzed in aggregate forms such as binned spike counts, peri-stimulus time histograms, firing rates, or population codes. Various forms of averaging also occur in the brain, from the spatial averaging of spikes within dendritic trees to their temporal averaging through synaptic dynamics. However, how these forms of averaging are related to each other or to the spatial and temporal units of information representation within the neural code has remained poorly understood. Materials and methodsIn this work we developed NeuroPixelHD, a symbolic hyperdimensional model of MUA, and used it to decode the spatial location and identity of static images shown ton= 9 mice in the Allen Institute Visual Coding—NeuroPixels dataset from large-scale MUA recordings. We parametrically varied the spatial and temporal resolutions of the MUA data provided to the model, and compared its resulting decoding accuracy. ResultsFor almost all subjects, we found 125ms temporal resolution to maximize decoding accuracy for both the spatial location of Gabor patches (81 classes for patches presented over a 9×9 grid) as well as the identity of natural images (118 classes corresponding to 118 images) across the whole brain. This optimal temporal resolution nevertheless varied greatly between different regions, followed a sensory-associate hierarchy, and was significantly modulated by the central frequency of theta-band oscillations across different regions. Spatially, the optimal resolution was at either of two mesoscale levels for almost all mice: the area level, where the spiking activity of all neurons within each brain area are combined, and the population level, where neuronal spikes within each area are combined across fast spiking (putatively inhibitory) and regular spiking (putatively excitatory) neurons, respectively. We also observed an expected interplay between optimal spatial and temporal resolutions, whereby increasing the amount of averaging across one dimension (space or time) decreases the amount of averaging that is optimal across the other dimension, and vice versa. DiscussionOur findings corroborate existing empirical practices of spatiotemporal binning and averaging in MUA data analysis, and provide a rigorous computational framework for optimizing the level of such aggregations. Our findings can also synthesize these empirical practices with existing knowledge of the various sources of biological averaging in the brain into a new theory of neural information processing in which theunit of informationvaries dynamically based on neuronal signal and noise correlations across space and time.more » « less
-
Neural populations encode the sensory world imperfectly: their capacity is limited by the number of neurons, availability of metabolic and other biophysical resources, and intrinsic noise. The brain is presumably shaped by these limitations, improving efficiency by discarding some aspects of incoming sensory streams, while preferentially preserving commonly occurring, behaviorally-relevant information. Here we construct a stochastic recurrent neural circuit model that can learn efficient, task-specific sensory codes using a novel form of reward-modulated Hebbian synaptic plasticity. We illustrate the flexibility of the model by training an initially unstructured neural network to solve two different tasks: stimulus estimation, and stimulus discrimination. The network achieves high performance in both tasks by appropriately allocating resources and using its recurrent circuitry to best compensate for different levels of noise. We also show how the interaction between stimulus priors and task structure dictates the emergent network representations.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1038/s41467-021-26793-9
