skip to main content


Title: Adaptive volumetric descattering in digital holography

We demonstrate an adaptive learning framework, termed dynamic synthesis network (DSN), which dynamically synthesizes model weights and adapts to different scattering conditions. The efficiency of DSN is demonstrated in holographic 3D particle descattering.

 
more » « less
Award ID(s):
1846784
NSF-PAR ID:
10392383
Author(s) / Creator(s):
; ;
Date Published:
Journal Name:
Frontiers in Optics + Laser Science 2022 (FIO, LS)
Page Range / eLocation ID:
JTu5A.71
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. This data set for the manuscript entitled "Design of Peptides that Fold and Self-Assemble on Graphite" includes all files needed to run and analyze the simulations described in the this manuscript in the molecular dynamics software NAMD, as well as the output of the simulations. The files are organized into directories corresponding to the figures of the main text and supporting information. They include molecular model structure files (NAMD psf or Amber prmtop format), force field parameter files (in CHARMM format), initial atomic coordinates (pdb format), NAMD configuration files, Colvars configuration files, NAMD log files, and NAMD output including restart files (in binary NAMD format) and trajectories in dcd format (downsampled to 10 ns per frame). Analysis is controlled by shell scripts (Bash-compatible) that call VMD Tcl scripts or python scripts. These scripts and their output are also included.

    Version: 2.0

    Changes versus version 1.0 are the addition of the free energy of folding, adsorption, and pairing calculations (Sim_Figure-7) and shifting of the figure numbers to accommodate this addition.


    Conventions Used in These Files
    ===============================

    Structure Files
    ----------------
    - graph_*.psf or sol_*.psf (original NAMD (XPLOR?) format psf file including atom details (type, charge, mass), as well as definitions of bonds, angles, dihedrals, and impropers for each dipeptide.)

    - graph_*.pdb or sol_*.pdb (initial coordinates before equilibration)
    - repart_*.psf (same as the above psf files, but the masses of non-water hydrogen atoms have been repartitioned by VMD script repartitionMass.tcl)
    - freeTop_*.pdb (same as the above pdb files, but the carbons of the lower graphene layer have been placed at a single z value and marked for restraints in NAMD)
    - amber_*.prmtop (combined topology and parameter files for Amber force field simulations)
    - repart_amber_*.prmtop (same as the above prmtop files, but the masses of non-water hydrogen atoms have been repartitioned by ParmEd)

    Force Field Parameters
    ----------------------
    CHARMM format parameter files:
    - par_all36m_prot.prm (CHARMM36m FF for proteins)
    - par_all36_cgenff_no_nbfix.prm (CGenFF v4.4 for graphene) The NBFIX parameters are commented out since they are only needed for aromatic halogens and we use only the CG2R61 type for graphene.
    - toppar_water_ions_prot_cgenff.str (CHARMM water and ions with NBFIX parameters needed for protein and CGenFF included and others commented out)

    Template NAMD Configuration Files
    ---------------------------------
    These contain the most commonly used simulation parameters. They are called by the other NAMD configuration files (which are in the namd/ subdirectory):
    - template_min.namd (minimization)
    - template_eq.namd (NPT equilibration with lower graphene fixed)
    - template_abf.namd (for adaptive biasing force)

    Minimization
    -------------
    - namd/min_*.0.namd

    Equilibration
    -------------
    - namd/eq_*.0.namd

    Adaptive biasing force calculations
    -----------------------------------
    - namd/eabfZRest7_graph_chp1404.0.namd
    - namd/eabfZRest7_graph_chp1404.1.namd (continuation of eabfZRest7_graph_chp1404.0.namd)

    Log Files
    ---------
    For each NAMD configuration file given in the last two sections, there is a log file with the same prefix, which gives the text output of NAMD. For instance, the output of namd/eabfZRest7_graph_chp1404.0.namd is eabfZRest7_graph_chp1404.0.log.

    Simulation Output
    -----------------
    The simulation output files (which match the names of the NAMD configuration files) are in the output/ directory. Files with the extensions .coor, .vel, and .xsc are coordinates in NAMD binary format, velocities in NAMD binary format, and extended system information (including cell size) in text format. Files with the extension .dcd give the trajectory of the atomic coorinates over time (and also include system cell information). Due to storage limitations, large DCD files have been omitted or replaced with new DCD files having the prefix stride50_ including only every 50 frames. The time between frames in these files is 50 * 50000 steps/frame * 4 fs/step = 10 ns. The system cell trajectory is also included for the NPT runs are output/eq_*.xst.

    Scripts
    -------
    Files with the .sh extension can be found throughout. These usually provide the highest level control for submission of simulations and analysis. Look to these as a guide to what is happening. If there are scripts with step1_*.sh and step2_*.sh, they are intended to be run in order, with step1_*.sh first.


    CONTENTS
    ========

    The directory contents are as follows. The directories Sim_Figure-1 and Sim_Figure-8 include README.txt files that describe the files and naming conventions used throughout this data set.

    Sim_Figure-1: Simulations of N-acetylated C-amidated amino acids (Ac-X-NHMe) at the graphite–water interface.

    Sim_Figure-2: Simulations of different peptide designs (including acyclic, disulfide cyclized, and N-to-C cyclized) at the graphite–water interface.

    Sim_Figure-3: MM-GBSA calculations of different peptide sequences for a folded conformation and 5 misfolded/unfolded conformations.

    Sim_Figure-4: Simulation of four peptide molecules with the sequence cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) at the graphite–water interface at 370 K.

    Sim_Figure-5: Simulation of four peptide molecules with the sequence cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) at the graphite–water interface at 295 K.

    Sim_Figure-5_replica: Temperature replica exchange molecular dynamics simulations for the peptide cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) with 20 replicas for temperatures from 295 to 454 K.

    Sim_Figure-6: Simulation of the peptide molecule cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) in free solution (no graphite).

    Sim_Figure-7: Free energy calculations for folding, adsorption, and pairing for the peptide CHP1404 (sequence: cyc(GTGSGTG-GPGG-GCGTGTG-SGPG)). For folding, we calculate the PMF as function of RMSD by replica-exchange umbrella sampling (in the subdirectory Folding_CHP1404_Graphene/). We make the same calculation in solution, which required 3 seperate replica-exchange umbrella sampling calculations (in the subdirectory Folding_CHP1404_Solution/). Both PMF of RMSD calculations for the scrambled peptide are in Folding_scram1404/. For adsorption, calculation of the PMF for the orientational restraints and the calculation of the PMF along z (the distance between the graphene sheet and the center of mass of the peptide) are in Adsorption_CHP1404/ and Adsorption_scram1404/. The actual calculation of the free energy is done by a shell script ("doRestraintEnergyError.sh") in the 1_free_energy/ subsubdirectory. Processing of the PMFs must be done first in the 0_pmf/ subsubdirectory. Finally, files for free energy calculations of pair formation for CHP1404 are found in the Pair/ subdirectory.

    Sim_Figure-8: Simulation of four peptide molecules with the sequence cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) where the peptides are far above the graphene–water interface in the initial configuration.

    Sim_Figure-9: Two replicates of a simulation of nine peptide molecules with the sequence cyc(GTGSGTG-GPGG-GCGTGTG-SGPG) at the graphite–water interface at 370 K.

    Sim_Figure-9_scrambled: Two replicates of a simulation of nine peptide molecules with the control sequence cyc(GGTPTTGGGGGGSGGPSGTGGC) at the graphite–water interface at 370 K.

    Sim_Figure-10: Adaptive biasing for calculation of the free energy of the folded peptide as a function of the angle between its long axis and the zigzag directions of the underlying graphene sheet.

     

    This material is based upon work supported by the US National Science Foundation under grant no. DMR-1945589. A majority of the computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CHE-1726332, CNS-1006860, EPS-1006860, and EPS-0919443. This work used the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by National Science Foundation grant number ACI-1548562, through allocation BIO200030. 
    more » « less
  2. A biodiversity dataset graph: UCSB-IZC

    The intended use of this archive is to facilitate (meta-)analysis of the UC Santa Barbara Invertebrate Zoology Collection (UCSB-IZC). UCSB-IZC is a natural history collection of invertebrate zoology at Cheadle Center of Biodiversity and Ecological Restoration, University of California Santa Barbara.

    This dataset provides versioned snapshots of the UCSB-IZC network as tracked by Preston [2,3] between 2021-10-08 and 2021-11-04 using [preston track "https://api.gbif.org/v1/occurrence/search/?datasetKey=d6097f75-f99e-4c2a-b8a5-b0fc213ecbd0"].

    This archive contains 14349 images related to 32533 occurrence/specimen records. See included sample-image.jpg and their associated meta-data sample-image.json [4].

    The images were counted using:

    $ preston cat hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c\
     | grep -o -P ".*depict"\
     | sort\
     | uniq\
     | wc -l

    And the occurrences were counted using:

    $ preston cat hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c\
     | grep -o -P "occurrence/([0-9])+"\
     | sort\
     | uniq\
     | wc -l

    The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance files and data files. Only two index and provenance files are included and have been individually included in this dataset publication. Index files provide a way to links provenance files in time to establish a versioning mechanism.

    To retrieve and verify the downloaded UCSB-IZC biodiversity dataset graph, first download preston-*.tar.gz. Then, extract the archives into a "data" folder. Alternatively, you can use the Preston [2,3] command-line tool to "clone" this dataset using:

    $ java -jar preston.jar clone --remote https://archive.org/download/preston-ucsb-izc/data.zip/,https://zenodo.org/record/5557670/files,https://zenodo.org/record/5557670/files/5660088

    After that, verify the index of the archive by reproducing the following provenance log history:

    $ java -jar preston.jar history
    <urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36> .
    <hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c> <http://purl.org/pav/previousVersion> <hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36> .

    To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.

    $ java -jar preston.jar verify
    hash://sha256/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c    file:/home/jhpoelen/ucsb-izc/data/ce/1d/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c    OK    CONTENT_PRESENT_VALID_HASH    66438    hash://sha256/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c
    hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844    file:/home/jhpoelen/ucsb-izc/data/f6/8d/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844    OK    CONTENT_PRESENT_VALID_HASH    4093    hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844
    hash://sha256/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef    file:/home/jhpoelen/ucsb-izc/data/3e/70/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef    OK    CONTENT_PRESENT_VALID_HASH    5746    hash://sha256/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef
    hash://sha256/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b    file:/home/jhpoelen/ucsb-izc/data/99/58/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b    OK    CONTENT_PRESENT_VALID_HASH    6147    hash://sha256/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b

    Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston".

    Files in this data publication:

    --- start of file descriptions ---

    -- description of archive and its contents (this file) --
    README

    -- executable java jar containing preston [2,3] v0.3.1. --
    preston.jar

    -- preston archive containing UCSB-IZC (meta-)data/image files, associated provenance logs and a provenance index --
    preston-[00-ff].tar.gz

    -- individual provenance index files --
    2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a

    -- example image and meta-data --
    sample-image.jpg (with hash://sha256/916ba5dc6ad37a3c16634e1a0e3d2a09969f2527bb207220e3dbdbcf4d6b810c)
    sample-image.json (with hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844)

    --- end of file descriptions ---


    References

    [1] Cheadle Center for Biodiversity and Ecological Restoration (2021). University of California Santa Barbara Invertebrate Zoology Collection. Occurrence dataset https://doi.org/10.15468/w6hvhv accessed via GBIF.org on 2021-11-04 as indexed by the Global Biodiversity Informatics Facility (GBIF) with provenance hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36 hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c.
    [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 .
    [3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132
    [4] Cheadle Center for Biodiversity and Ecological Restoration (2021). University of California Santa Barbara Invertebrate Zoology Collection. Occurrence dataset https://doi.org/10.15468/w6hvhv accessed via GBIF.org on 2021-10-08. https://www.gbif.org/occurrence/3323647301 . hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844 hash://sha256/916ba5dc6ad37a3c16634e1a0e3d2a09969f2527bb207220e3dbdbcf4d6b810c

    This work is funded in part by grant NSF OAC 1839201 and NSF DBI 2102006 from the National Science Foundation. 
    more » « less
  3. PLEASE CONTACT AUTHORS IF YOU CONTRIBUTE AND WOULD LIKE TO BE LISTED AS A CO-AUTHOR. (this message will be removed some time weeks/months after the first publication)

    Terrestrial Parasite Tracker indexed biotic interactions and review summary.

    The Terrestrial Parasite Tracker (TPT) project began in 2019 and is funded by the National Science foundation to mobilize data from vector and ectoparasite collections to data aggregators (e.g., iDigBio, GBIF) to help build a comprehensive picture of arthropod host-association evolution, distributions, and the ecological interactions of disease vectors which will assist scientists, educators, land managers, and policy makers. Arthropod parasites often are important to human and wildlife health and safety as vectors of pathogens, and it is critical to digitize these specimens so that they, and their biotic interaction data, will be available to help understand and predict the spread of human and wildlife disease.

    This data publication contains versioned TPT associated datasets and related data products that were tracked, reviewed and indexed by Global Biotic Interactions (GloBI) and associated tools. GloBI provides open access to finding species interaction data (e.g., predator-prey, pollinator-plant, pathogen-host, parasite-host) by combining existing open datasets using open source software.

    If you have questions or comments about this publication, please open an issue at https://github.com/ParasiteTracker/tpt-reporting or contact the authors by email.

    Funding:
    The creation of this archive was made possible by the National Science Foundation award "Collaborative Research: Digitization TCN: Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease," Award numbers DBI:1901932 and DBI:1901926

    References:
    Jorrit H. Poelen, James D. Simons and Chris J. Mungall. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2014.08.005.

    GloBI Data Review Report

    Datasets under review:
     - University of Michigan Museum of Zoology Insect Division. Full Database Export 2020-11-20 provided by Erika Tucker and Barry Oconner. accessed via https://github.com/EMTuckerLabUMMZ/ummzi/archive/6731357a377e9c2748fc931faa2ff3dc0ce3ea7a.zip on 2022-06-24T14:02:48.801Z
     - Academy of Natural Sciences Entomology Collection for the Parasite Tracker Project accessed via https://github.com/globalbioticinteractions/ansp-para/archive/5e6592ad09ec89ba7958266ad71ec9d5d21d1a44.zip on 2022-06-24T14:04:22.091Z
     - Bernice Pauahi Bishop Museum, J. Linsley Gressitt Center for Research in Entomology accessed via https://github.com/globalbioticinteractions/bpbm-ent/archive/c085398dddd36f8a1169b9cf57de2a572229341b.zip on 2022-06-24T14:04:37.692Z
     - Texas A&M University, Biodiversity Teaching and Research Collections accessed via https://github.com/globalbioticinteractions/brtc-para/archive/f0a718145b05ed484c4d88947ff712d5f6395446.zip on 2022-06-24T14:06:40.154Z
     - Brigham Young University Arthropod Museum accessed via https://github.com/globalbioticinteractions/byu-byuc/archive/4a609ac6a9a03425e2720b6cdebca6438488f029.zip on 2022-06-24T14:06:51.420Z
     - California Academy of Sciences Entomology accessed via https://github.com/globalbioticinteractions/cas-ent/archive/562aea232ec74ab615f771239451e57b057dc7c0.zip on 2022-06-24T14:07:16.371Z
     - Clemson University Arthropod Collection accessed via https://github.com/globalbioticinteractions/cu-cuac/archive/6cdcbbaa4f7cec8e1eac705be3a999bc5259e00f.zip on 2022-06-24T14:07:40.925Z
     - Denver Museum of Nature and Science (DMNS) Parasite specimens (DMNS:Para) accessed via https://github.com/globalbioticinteractions/dmns-para/archive/a037beb816226eb8196533489ee5f98a6dfda452.zip on 2022-06-24T14:08:00.730Z
     - Field Museum of Natural History IPT accessed via https://github.com/globalbioticinteractions/fmnh/archive/6bfc1b7e46140e93f5561c4e837826204adb3c2f.zip on 2022-06-24T14:18:51.995Z
     - Illinois Natural History Survey Insect Collection accessed via https://github.com/globalbioticinteractions/inhs-insects/archive/38692496f590577074c7cecf8ea37f85d0594ae1.zip on 2022-06-24T14:19:37.563Z
     - UMSP / University of Minnesota / University of Minnesota Insect Collection accessed via https://github.com/globalbioticinteractions/min-umsp/archive/3f1b9d32f947dcb80b9aaab50523e097f0e8776e.zip on 2022-06-24T14:20:27.232Z
     - Milwaukee Public Museum Biological Collections Data Portal accessed via https://github.com/globalbioticinteractions/mpm/archive/9f44e99c49ec5aba3f8592cfced07c38d3223dcd.zip on 2022-06-24T14:20:46.185Z
     - Museum for Southern Biology (MSB) Parasite Collection accessed via https://github.com/globalbioticinteractions/msb-para/archive/178a0b7aa0a8e14b3fe953e770703fe331eadacc.zip on 2022-06-24T15:16:07.223Z
     - The Albert J. Cook Arthropod Research Collection accessed via https://github.com/globalbioticinteractions/msu-msuc/archive/38960906380443bd8108c9e44aeff4590d8d0b50.zip on 2022-06-24T16:09:40.702Z
     - Ohio State University Acarology Laboratory accessed via https://github.com/globalbioticinteractions/osal-ar/archive/876269d66a6a94175dbb6b9a604897f8032b93dd.zip on 2022-06-24T16:10:00.281Z
     - Frost Entomological Museum, Pennsylvania State University accessed via https://github.com/globalbioticinteractions/psuc-ento/archive/30b1f96619a6e9f10da18b42fb93ff22cc4f72e2.zip on 2022-06-24T16:10:07.741Z
     - Purdue Entomological Research Collection accessed via https://github.com/globalbioticinteractions/pu-perc/archive/e0909a7ca0a8df5effccb288ba64b28141e388ba.zip on 2022-06-24T16:10:26.654Z
     - Texas A&M University Insect Collection accessed via https://github.com/globalbioticinteractions/tamuic-ent/archive/f261a8c192021408da67c39626a4aac56e3bac41.zip on 2022-06-24T16:10:58.496Z
     - University of California Santa Barbara Invertebrate Zoology Collection accessed via https://github.com/globalbioticinteractions/ucsb-izc/archive/825678ad02df93f6d4469f9d8b7cc30151b9aa45.zip on 2022-06-24T16:12:29.854Z
     - University of Hawaii Insect Museum accessed via https://github.com/globalbioticinteractions/uhim/archive/53fa790309e48f25685e41ded78ce6a51bafde76.zip on 2022-06-24T16:12:41.408Z
     - University of New Hampshire Collection of Insects and other Arthropods UNHC-UNHC accessed via https://github.com/globalbioticinteractions/unhc/archive/f72575a72edda8a4e6126de79b4681b25593d434.zip on 2022-06-24T16:12:59.500Z
     - Scott L. Gardner and Gabor R. Racz (2021). University of Nebraska State Museum - Parasitology. Harold W. Manter Laboratory of Parasitology. University of Nebraska State Museum. accessed via https://github.com/globalbioticinteractions/unl-nsm/archive/6bcd8aec22e4309b7f4e8be1afe8191d391e73c6.zip on 2022-06-24T16:13:06.914Z
     - Data were obtained from specimens belonging to the United States National Museum of Natural History (USNM), Smithsonian Institution, Washington DC and digitized by the Walter Reed Biosystematics Unit (WRBU). accessed via https://github.com/globalbioticinteractions/usnmentflea/archive/ce5cb1ed2bbc13ee10062b6f75a158fd465ce9bb.zip on 2022-06-24T16:13:38.013Z
     - US National Museum of Natural History Ixodes Records accessed via https://github.com/globalbioticinteractions/usnm-ixodes/archive/c5fcd5f34ce412002783544afb628a33db7f47a6.zip on 2022-06-24T16:13:45.666Z
     - Price Institute of Parasite Research, School of Biological Sciences, University of Utah accessed via https://github.com/globalbioticinteractions/utah-piper/archive/43da8db550b5776c1e3d17803831c696fe9b8285.zip on 2022-06-24T16:13:54.724Z
     - University of Wisconsin Stevens Point, Stephen J. Taft Parasitological Collection accessed via https://github.com/globalbioticinteractions/uwsp-para/archive/f9d0d52cd671731c7f002325e84187979bca4a5b.zip on 2022-06-24T16:14:04.745Z
     - Giraldo-Calderón, G. I., Emrich, S. J., MacCallum, R. M., Maslen, G., Dialynas, E., Topalis, P., … Lawson, D. (2015). VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic acids research, 43(Database issue), D707–D713. doi:10.1093/nar/gku1117. accessed via https://github.com/globalbioticinteractions/vectorbase/archive/00d6285cd4e9f4edd18cb2778624ab31b34b23b8.zip on 2022-06-24T16:14:11.965Z
     - WIRC / University of Wisconsin Madison WIS-IH / Wisconsin Insect Research Collection accessed via https://github.com/globalbioticinteractions/wis-ih-wirc/archive/34162b86c0ade4b493471543231ae017cc84816e.zip on 2022-06-24T16:14:29.743Z
     - Yale University Peabody Museum Collections Data Portal accessed via https://github.com/globalbioticinteractions/yale-peabody/archive/43be869f17749d71d26fc820c8bd931d6149fe8e.zip on 2022-06-24T16:23:29.289Z

    Generated on:
    2022-06-24

    by:
    GloBI's Elton 0.12.4 
    (see https://github.com/globalbioticinteractions/elton).

    Note that all files ending with .tsv are files formatted 
    as UTF8 encoded tab-separated values files.

    https://www.iana.org/assignments/media-types/text/tab-separated-values


    Included in this review archive are:

    README:
      This file.

    review_summary.tsv:
      Summary across all reviewed collections of total number of distinct review comments.

    review_summary_by_collection.tsv:
      Summary by reviewed collection of total number of distinct review comments.

    indexed_interactions_by_collection.tsv: 
      Summary of number of indexed interaction records by institutionCode and collectionCode.

    review_comments.tsv.gz:
      All review comments by collection.

    indexed_interactions_full.tsv.gz:
      All indexed interactions for all reviewed collections.

    indexed_interactions_simple.tsv.gz:
      All indexed interactions for all reviewed collections selecting only sourceInstitutionCode, sourceCollectionCode, sourceCatalogNumber, sourceTaxonName, interactionTypeName and targetTaxonName.

    datasets_under_review.tsv:
      Details on the datasets under review.

    elton.jar: 
      Program used to update datasets and generate the review reports and associated indexed interactions.

    datasets.zip:
      Source datasets used by elton.jar in process of executing the generate_report.sh script.

    generate_report.sh:
      Program used to generate the report

    generate_report.log:
      Log file generated as part of running the generate_report.sh script
     

     
    more » « less
  4. A biodiversity dataset graph: GBIF, iDigBio, BioCASe

    The intended use of this archive is to facilitate meta-analysis of the Global Biodiversity Information Facility, Integrated Digitized Biocollections, Biological Collection Access Service (GBIF, iDigBio, BioCASe). GBIF, iDigBio and BioCASe help provide access to biological data collections. 

    This dataset provides versioned provenance logs of snapshots of the GBIF, iDigBio, BioCASe network as tracked by Preston [2] between 2018-09-03 and 2019-10-02 using "preston update -u https://gbif.org,https://idigbio.org,http://biocase.org". 

    This publication contains two types of files: index files and provenance logs. Associated data files are hosted elsewhere for pragmatic reasons. Index files provide a way to link provenance files in time to establish a versioning mechanism. Provenance logs describe how, when, what and where the GBIF, iDigBio, BioCASe content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 .  

    To retrieve and verify the downloaded GBIF, iDigBio, BioCASe biodiversity dataset graph, use the preston[2] command-line tool to "clone" this dataset using:

    $ java -jar preston.jar ls --remote https://zenodo.org/record/3484205/files > /dev/null

    Optionally, you can retrieve all associated data (~500GB) files using:

    $ java -jar preston.jar clone --remote https://zenodo.org/record/3484205/files,https://deeplinker.bio

    Please note https://deeplinker.bio is a Preston remote that provided access to GBIF, iDigBio, BioCASe data files at time of writing (13 Oct 2019). This remote can replaced with any other Preston remote(s) if needed. This may take a while depending on network speed and hardware constraints.

    After that, verify the index of the archive by reproducing the following provenance log history:

    $ java -jar preston.jar history
    <0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> .
    <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> <http://purl.org/pav/previousVersion> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> .
    <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> <http://purl.org/pav/previousVersion> <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> .
    <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> <http://purl.org/pav/previousVersion> <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> .
    <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> <http://purl.org/pav/previousVersion> <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> .
    <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> <http://purl.org/pav/previousVersion> <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> .
    <hash://sha256/24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43> <http://purl.org/pav/previousVersion> <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> .
    <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> <http://purl.org/pav/previousVersion> <hash://sha256/24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43> .
    <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> <http://purl.org/pav/previousVersion> <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> .
    <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> <http://purl.org/pav/previousVersion> <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> .
    <hash://sha256/20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17> <http://purl.org/pav/previousVersion> <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> .
    <hash://sha256/7801a034fe3c7920e032d2338a690b700ca41a90a92d878fc3a67111cad16d29> <http://purl.org/pav/previousVersion> <hash://sha256/20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17> .
    <hash://sha256/c1b50502b1ca87046eeb7fe4863d0cf9319b6645ff2142db69f21b4cc23332b6> <http://purl.org/pav/previousVersion> <hash://sha256/7801a034fe3c7920e032d2338a690b700ca41a90a92d878fc3a67111cad16d29> .
    <hash://sha256/dc293e26154b89273791b9674d81110029f987c686b386184d0b66a5b95f9cda> <http://purl.org/pav/previousVersion> <hash://sha256/c1b50502b1ca87046eeb7fe4863d0cf9319b6645ff2142db69f21b4cc23332b6> .
    <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> <http://purl.org/pav/previousVersion> <hash://sha256/dc293e26154b89273791b9674d81110029f987c686b386184d0b66a5b95f9cda> .
    <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> <http://purl.org/pav/previousVersion> <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> .
    <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> <http://purl.org/pav/previousVersion> <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> .
    <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> <http://purl.org/pav/previousVersion> <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> .
    <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> <http://purl.org/pav/previousVersion> <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> .
    <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> <http://purl.org/pav/previousVersion> <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> .
    <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> <http://purl.org/pav/previousVersion> <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> .
    <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> <http://purl.org/pav/previousVersion> <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> .
    <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> <http://purl.org/pav/previousVersion> <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> .
    <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> <http://purl.org/pav/previousVersion> <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> .
    <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> <http://purl.org/pav/previousVersion> <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> .
    <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> <http://purl.org/pav/previousVersion> <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> .
    <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> <http://purl.org/pav/previousVersion> <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> .
    <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> <http://purl.org/pav/previousVersion> <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> .
    <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> <http://purl.org/pav/previousVersion> <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> .
    <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> <http://purl.org/pav/previousVersion> <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> .
    <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> <http://purl.org/pav/previousVersion> <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> .
    <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> <http://purl.org/pav/previousVersion> <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> .
    <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> <http://purl.org/pav/previousVersion> <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> .
    <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> <http://purl.org/pav/previousVersion> <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> .
    <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> <http://purl.org/pav/previousVersion> <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> .
    <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> <http://purl.org/pav/previousVersion> <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> .
    <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> <http://purl.org/pav/previousVersion> <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> .
    <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> <http://purl.org/pav/previousVersion> <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> .
    <hash://sha256/d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1> <http://purl.org/pav/previousVersion> <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> .

    If you retrieved data files, you can check the integrity of the extracted archive by confirming that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.

    $ java -jar preston.jar verify
    hash://sha256/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    file:/home/preston/preston-archive/data/3e/ff/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    OK    CONTENT_PRESENT_VALID_HASH    89931
    hash://sha256/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    file:/home/preston/preston-archive/data/18/48/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    OK    CONTENT_PRESENT_VALID_HASH    210344
    hash://sha256/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    file:/home/preston/preston-archive/data/18/46/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    OK    CONTENT_PRESENT_VALID_HASH    210344
    hash://sha256/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    file:/home/preston/preston-archive/data/55/4f/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    OK    CONTENT_PRESENT_VALID_HASH    202701

    Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". 

    Files in this data publication:

    --- start of file descriptions ---

    -- description of archive and its contents (this file) --
    README 

    -- executable java jar containing preston[2] v0.1.8. --
    preston.jar

    -- individual provenance index files --
    049b0eb995b484c1e64184f582f51b3c608dcade70c4aefc2d53f903bae45098
    073315c32d7fd19868449bef1b11b15a86981dee53a31f7f5c882f7e3be413c3
    1172c6927e58113db668409d36b6a2cd84cf1a93e85b50d65d0bd008a5d8aaa4
    1707cb11cd9f696f1a86fd06742c1e14fad856747be88791f79f6fc7c979d5a6
    272ff1f12a573c667634d934d06b8bab0dd9cc6558795287ea99fab87620d005
    2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a
    37b8b636e939072d0df7246bf077ead4279f9dd33929be322e631104b0641308
    3901b6af522d535fb164823704686e72f73b7798a2a64eaeb817134552c69e2c
    395ed0c95a624f8853116442690965acf69151acd6b33cc4fc710f567828f784
    460c14ed0129c1469c9149ed1030cdc133f110fb32048748323982cb88dd7eda
    477b6c4e9ecf5c8cd1b5502e0245c8622fa4b358f6710f97db39b473ed3d8235
    52b7274f5d795e4987964bb1a327dd6d6e4f65870e6a7aac172481d0ba3013d4
    54786bde04751bc31bf38c9e89c010cfee7de91760e1f5f31218ff11acff8a70
    6135b237a49b37b857801836494f2c36bcb1526bdacf001a9d11727fff6bf1f1
    69b4d5ca9643c14501a48a2b1eb24971a6da68da5033c304f7f00b94e16a11d9
    70066ea7c6a9dd6c2193cdc90b3b1ff7664af235ab245f6c03d1dd497b376570
    7084702f8025c99a6608a3355ccad5ff5e644ad544121f5d524961f7fe29ceb6
    7ebb008412baaac3afcc8af68b796bf4ca98f367cfd61a815eee82cdffeab196
    886edb8d22973bb04fe3b42d12106029a00b9deab3fb77d8787123327b77ae3b
    8a6d7e2ab026ff56380235fd9696f5e538e5e426b9374f2ddf3a705e186a7788
    95f88f27ed3448534206406738dfb5c5030fe3d6883c6dda261649357600883f
    9d12cae409e8ea0a546f7945cc629d622400000c3338e4710d9c6084fca9274d
    9fa9ea50db419c75251026708183add8973d9e68a79062f7808b110bef21006e
    a24abbe089556f51fe9c2a51febdcaf893b419556312bcc63515713fc4a52922
    a3b0477fe46f09b0f51c0f651691665c149bc341f5c19996675d849252e86453
    a486474333f05884580dd10c54c95999063c7d1bc22e2cbe3bead604aca0a183
    a524b9af3f172793998e1f9c5c0e9c949cc935624a17ed3364d32bc0391c9382
    aa0e508aeb96f240b551fe92ff4224325ddcdf66f97eef95ac78aec62e53a169
    ab34300942ec02cca7adf2744f6fbc1ab7587060bea09ef92b65b66f89d1ddcd
    b05d4a17d9a02180669d7eb017102dd1a739fb4615759cba94baf944b2aee29c
    b37c79f95c22fc4d657cc89dedd7a870923285da690ad4f5121962492484a142
    be6d8cd5f1405a5e3e8aa492fb8dab41f6521608834d746e6cbc58d2f550f918
    c06f4413a97a5540fbdd40bdbfb194435c154533df7fe388dfdd378084e19c3d
    c585b8addfb7f7991ad74c0bae158aecefc6be5b11c28b020135e0f13040e187
    c66587e9730a6f68e961240038892df656ea99a1a25f4ff8ce556c07b09a4878
    cea1aab236de5de8da8954797d846c225bf2ad4f8fe3cd413e60ab029f9e1b3e
    da05cc27a47e755ebe912fafae434df5bd31a5d92658fe1943acc0a2023fab32
    fcb2ee4d630a9a1440417b0c46da5bc1578a388d6aedd12189a23283b60dde7d
    ff32a7cbc99eaf6b67695fd94284a9b1b47a76497ef4d10ffc4dae199cc0d7c3

    --- individual provenance logs --
    05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd
    09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2
    0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781
    102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9
    1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e
    20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17
    24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43
    261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12
    3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7
    3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee
    480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6
    58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70
    5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7
    5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa
    6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7
    650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79
    668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103
    7801a034fe3c7920e032d2338a690b700ca41a90a92d878fc3a67111cad16d29
    7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93
    8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4
    9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e
    a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208
    a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6
    af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae
    af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63
    b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4
    b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d
    b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd
    ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe
    c1b50502b1ca87046eeb7fe4863d0cf9319b6645ff2142db69f21b4cc23332b6
    c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55
    d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1
    d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3
    dc293e26154b89273791b9674d81110029f987c686b386184d0b66a5b95f9cda
    e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df
    e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb
    eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6
    f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36
    fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc

    --- end of file descriptions ---

    References 

    [1] Global Biodiversity Information Facility, Integrated Digitized Biocollections, Biological Collection Access Service (GBIF, iDigBio, BioCASe, https://gbif.org,https://idigbio.org,http://biocase.org) accessed from 2018-09-03 to 2019-10-02 with provenance hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7.
    [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 . 

    This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation

     
    more » « less
  5. A biodiversity dataset graph: GBIF, iDigBio, BioCASe

    The intended use of this archive is to facilitate meta-analysis of the Global Biodiversity Information Facility, Integrated Digitized Biocollections, Biological Collection Access Service (GBIF, iDigBio, BioCASe). GBIF, iDigBio and BioCASe help provide access to biological data collections.

    This dataset provides versioned provenance logs of snapshots of the GBIF, iDigBio, BioCASe network as tracked by Preston [2] between 2018-09-03 and 2020-05-02 using "preston update -u https://gbif.org,https://idigbio.org,http://biocase.org".

    This publication contains two types of files: index files and provenance logs. Associated data files are hosted elsewhere for pragmatic reasons. Index files provide a way to link provenance files in time to establish a versioning mechanism. Provenance logs describe how, when, what and where the GBIF, iDigBio, BioCASe content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 .  

    To retrieve and verify the downloaded GBIF, iDigBio, BioCASe biodiversity dataset graph, use the preston[2] command-line tool to "clone" this dataset using:

    $ java -jar preston.jar ls --remote https://zenodo.org/record/3852671/files > /dev/null

    Optionally, you can retrieve all associated data (>500GB) files using:

    $ java -jar preston.jar clone --remote https://zenodo.org/record/3852671/files,https://archive.org/download/biodiversity-dataset-archives/data.zip/data/,https://deeplinker.bio

    Please note https://archive.org/download/biodiversity-dataset-archives/data.zip/data/ and https://deeplinker.bio are Preston remotes that provided access to GBIF, iDigBio, BioCASe data files at time of writing (25 May 2020). These remotes can replaced with any other Preston remote(s) if needed. This may take a while depending on network speed and hardware constraints. See also https://archive.org/details/biodiversity-dataset-archives .

    After that, verify the index of the archive by reproducing the following provenance log history:

    $ java -jar preston.jar history

    <0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> .
    <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> <http://purl.org/pav/previousVersion> <hash://sha256/c253a5311a20c2fc082bf9bac87a1ec5eb6e4e51ff936e7be20c29c8e77dee55> .
    <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> <http://purl.org/pav/previousVersion> <hash://sha256/b83cf099449dae3f633af618b19d05013953e7a1d7d97bc5ac01afd7bd9abe5d> .
    <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> <http://purl.org/pav/previousVersion> <hash://sha256/7efdea9263e57605d2d2d8b79ccd26a55743123d0c974140c72c8c1cfc679b93> .
    <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> <http://purl.org/pav/previousVersion> <hash://sha256/05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd> .
    <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> <http://purl.org/pav/previousVersion> <hash://sha256/b5a30bbd8d51e9faf08d4ddebbc5bda9bab1b12545172f1524ac5ebdb0038bd4> .
    <hash://sha256/24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43> <http://purl.org/pav/previousVersion> <hash://sha256/1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e> .
    <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> <http://purl.org/pav/previousVersion> <hash://sha256/24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43> .
    <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> <http://purl.org/pav/previousVersion> <hash://sha256/ba02b235fd445904eae45b50bc637a195f25e9ca1637bcf26b2dc7f8698aa1fe> .
    <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> <http://purl.org/pav/previousVersion> <hash://sha256/102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9> .
    <hash://sha256/20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17> <http://purl.org/pav/previousVersion> <hash://sha256/fd27b0552c8a6800a8b3b1b822a2063a3215c1d9887badad09a62746b80846bc> .
    <hash://sha256/7801a034fe3c7920e032d2338a690b700ca41a90a92d878fc3a67111cad16d29> <http://purl.org/pav/previousVersion> <hash://sha256/20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17> .
    <hash://sha256/c1b50502b1ca87046eeb7fe4863d0cf9319b6645ff2142db69f21b4cc23332b6> <http://purl.org/pav/previousVersion> <hash://sha256/7801a034fe3c7920e032d2338a690b700ca41a90a92d878fc3a67111cad16d29> .
    <hash://sha256/dc293e26154b89273791b9674d81110029f987c686b386184d0b66a5b95f9cda> <http://purl.org/pav/previousVersion> <hash://sha256/c1b50502b1ca87046eeb7fe4863d0cf9319b6645ff2142db69f21b4cc23332b6> .
    <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> <http://purl.org/pav/previousVersion> <hash://sha256/dc293e26154b89273791b9674d81110029f987c686b386184d0b66a5b95f9cda> .
    <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> <http://purl.org/pav/previousVersion> <hash://sha256/f3ed6aa1bd15ee43d05e138b935040aaa745f6ca8c7e8f2dfbb0a3ae0df66f36> .
    <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> <http://purl.org/pav/previousVersion> <hash://sha256/650a28fff3e03dadba70dc05a34c580c04203380187953fa4a2fb778353fee79> .
    <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> <http://purl.org/pav/previousVersion> <hash://sha256/e4e5736e8bfec6c686eedde4c6dfa62845930d04e12dfa6f8a7d70abc3d087df> .
    <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> <http://purl.org/pav/previousVersion> <hash://sha256/e69d186ff3be11830c2da67d1bfeb896ec6398fc9d555fa26eaae1baa54450fb> .
    <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> <http://purl.org/pav/previousVersion> <hash://sha256/3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee> .
    <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> <http://purl.org/pav/previousVersion> <hash://sha256/5c469224fa0b6159bf33a59ddaa0246634e81bddd1728e7bf3540745055eccfa> .
    <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> <http://purl.org/pav/previousVersion> <hash://sha256/eb2c716ec85158a0785216de1b09965173fc368d12f213c1bf747bbc2e49c6a6> .
    <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> <http://purl.org/pav/previousVersion> <hash://sha256/3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7> .
    <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> <http://purl.org/pav/previousVersion> <hash://sha256/480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6> .
    <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> <http://purl.org/pav/previousVersion> <hash://sha256/58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70> .
    <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> <http://purl.org/pav/previousVersion> <hash://sha256/a0a18b0e32f933112084b846863438038f66f63eeeb22fa9d8d734e8a25bb208> .
    <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> <http://purl.org/pav/previousVersion> <hash://sha256/a7a5e7c6a4b21bdf67f48d6bea85f438b8133f674027b04625dfadec3ff985f6> .
    <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> <http://purl.org/pav/previousVersion> <hash://sha256/0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781> .
    <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> <http://purl.org/pav/previousVersion> <hash://sha256/8c0752dc6425b9c716837c9713ce284158b4cff70a1e66be2beb0677018831f4> .
    <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> <http://purl.org/pav/previousVersion> <hash://sha256/d99fa37caa268f8061980001146ed2a566e814d0740bb1974b76847512be95d3> .
    <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> <http://purl.org/pav/previousVersion> <hash://sha256/af0bb2c89571a30815d4488e72dede84a2ffc102bb87961f06884509fd5d1dae> .
    <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> <http://purl.org/pav/previousVersion> <hash://sha256/261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12> .
    <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> <http://purl.org/pav/previousVersion> <hash://sha256/5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7> .
    <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> <http://purl.org/pav/previousVersion> <hash://sha256/af8f9ed321d9c403617f54a96e3217adc918970fbbfe8b8715359669f4890b63> .
    <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> <http://purl.org/pav/previousVersion> <hash://sha256/9a41d2583f0b8169ffdd44fb2d3a5e057eba4a10e5d9193d0c6e9dcf07c3119e> .
    <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> <http://purl.org/pav/previousVersion> <hash://sha256/b9864a749112cad2fe19e62bf5d8bad580a7036d363d16d81d5c16be325fa0fd> .
    <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> <http://purl.org/pav/previousVersion> <hash://sha256/09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2> .
    <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> <http://purl.org/pav/previousVersion> <hash://sha256/668d5d6e9c9e7ddb410073ff75eb7f2935c60cc62944ba1fd96ca60feec4a103> .
    <hash://sha256/d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1> <http://purl.org/pav/previousVersion> <hash://sha256/6387c9ebed9507a0fbba2d161e83c2da73e0d6fa6dd51fb19ac4a4ca75b839c7> .
    <hash://sha256/6fb7271a2da1543036e39bcdb4c415a46b5437569eaaf0ffdef3e907a2f4309f> <http://purl.org/pav/previousVersion> <hash://sha256/d79fb9207329a2813b60713cf0968fda10721d576dcb7a36038faf18027eebc1> .
    <hash://sha256/ab62f4a9601f30d23353a479830f9d2dfc7898e15d2cc2d81977e898d885c908> <http://purl.org/pav/previousVersion> <hash://sha256/6fb7271a2da1543036e39bcdb4c415a46b5437569eaaf0ffdef3e907a2f4309f> .
    <hash://sha256/ff74959ec6e5e98e7db674afcb915f50725f049b968e9a9f10de169aa0a3dcb5> <http://purl.org/pav/previousVersion> <hash://sha256/ab62f4a9601f30d23353a479830f9d2dfc7898e15d2cc2d81977e898d885c908> .
    <hash://sha256/6c4c94cdb224d39e7c655b1a1a6afbba8daf3c9ac64c42ba72dfd346d5d3a547> <http://purl.org/pav/previousVersion> <hash://sha256/ff74959ec6e5e98e7db674afcb915f50725f049b968e9a9f10de169aa0a3dcb5> .
    <hash://sha256/9c17ce013b33c3c9e6bc513cb49a14660fad9bd6f87a4f21568cc871b10ba39b> <http://purl.org/pav/previousVersion> <hash://sha256/6c4c94cdb224d39e7c655b1a1a6afbba8daf3c9ac64c42ba72dfd346d5d3a547> .
    <hash://sha256/5dcf876c6cb0c5b15197acf1ea6989d41c1a1333c6a7e0437f035aa9d22a3790> <http://purl.org/pav/previousVersion> <hash://sha256/9c17ce013b33c3c9e6bc513cb49a14660fad9bd6f87a4f21568cc871b10ba39b> .
    <hash://sha256/39f83f5805f32f765003c5e9ee8c69adb3889d9f26dd61bf4aa3a829ac744e2c> <http://purl.org/pav/previousVersion> <hash://sha256/5dcf876c6cb0c5b15197acf1ea6989d41c1a1333c6a7e0437f035aa9d22a3790> .
    <hash://sha256/916255b2b73680595dcb22b30991a757dd223208473fb4fbe90405757bc07953> <http://purl.org/pav/previousVersion> <hash://sha256/39f83f5805f32f765003c5e9ee8c69adb3889d9f26dd61bf4aa3a829ac744e2c> .
    <hash://sha256/3b39831bcc286c1db44787e21b736378f5847a16b7c39bdac3dd2011e9189dc1> <http://purl.org/pav/previousVersion> <hash://sha256/916255b2b73680595dcb22b30991a757dd223208473fb4fbe90405757bc07953> .
    <hash://sha256/f13b15a20e4fe70b4a111e67ac20ef676404b8456dfc39694f2cb3a4c62a2b2d> <http://purl.org/pav/previousVersion> <hash://sha256/3b39831bcc286c1db44787e21b736378f5847a16b7c39bdac3dd2011e9189dc1> .
    <hash://sha256/8aacce08462b87a345d271081783bdd999663ef90099212c8831db399fc0831b> <http://purl.org/pav/previousVersion> <hash://sha256/f13b15a20e4fe70b4a111e67ac20ef676404b8456dfc39694f2cb3a4c62a2b2d> .


    If you retrieved data files, you can check the integrity of the extracted archive by confirming that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.

    $ java -jar preston.jar verify
    hash://sha256/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    file:/home/preston/preston-archive/data/3e/ff/3eff98d4b66368fd8d1f8fa1af6a057774d8a407a4771490beeb9e7add76f362    OK    CONTENT_PRESENT_VALID_HASH    89931
    hash://sha256/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    file:/home/preston/preston-archive/data/18/48/184886cc6ae4490a49a70b6fd9a3e1dfafce433fc8e3d022c89e0b75ea3cda0b    OK    CONTENT_PRESENT_VALID_HASH    210344
    hash://sha256/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    file:/home/preston/preston-archive/data/18/46/1846abf2b9623697cf9b2212e019bc1f6dc4a20da51b3b5629bfb964dc808c02    OK    CONTENT_PRESENT_VALID_HASH    210344
    hash://sha256/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    file:/home/preston/preston-archive/data/55/4f/554fdab07f2372bf363a1d7ef30fcf4c32e1da98b95a6342780c5eb35e0e7b38    OK    CONTENT_PRESENT_VALID_HASH    202701

    Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston".

    Files in this data publication:

    --- start of file descriptions ---

    -- description of archive and its contents (this file) --
    README

    -- executable java jar containing preston[2] v0.1.15. --
    preston.jar

    -- individual provenance index files --

    049b0eb995b484c1e64184f582f51b3c608dcade70c4aefc2d53f903bae45098
    073315c32d7fd19868449bef1b11b15a86981dee53a31f7f5c882f7e3be413c3
    1172c6927e58113db668409d36b6a2cd84cf1a93e85b50d65d0bd008a5d8aaa4
    1707cb11cd9f696f1a86fd06742c1e14fad856747be88791f79f6fc7c979d5a6
    272ff1f12a573c667634d934d06b8bab0dd9cc6558795287ea99fab87620d005
    2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a
    2bbbe11bb1932c6c8fbbc2ed16dde182f53c4cecbe0dd4f779c32f527a61bc62
    37b8b636e939072d0df7246bf077ead4279f9dd33929be322e631104b0641308
    3901b6af522d535fb164823704686e72f73b7798a2a64eaeb817134552c69e2c
    395ed0c95a624f8853116442690965acf69151acd6b33cc4fc710f567828f784
    460c14ed0129c1469c9149ed1030cdc133f110fb32048748323982cb88dd7eda
    477b6c4e9ecf5c8cd1b5502e0245c8622fa4b358f6710f97db39b473ed3d8235
    52b7274f5d795e4987964bb1a327dd6d6e4f65870e6a7aac172481d0ba3013d4
    54786bde04751bc31bf38c9e89c010cfee7de91760e1f5f31218ff11acff8a70
    6135b237a49b37b857801836494f2c36bcb1526bdacf001a9d11727fff6bf1f1
    674937568c0572bc2873f502dca2fe691ba230869f0aba73f5938422654c05cc
    69b4d5ca9643c14501a48a2b1eb24971a6da68da5033c304f7f00b94e16a11d9
    6df3363a236d4f026154ef86b34d9672b111333d0c2be179c43db146864f6ed3
    70066ea7c6a9dd6c2193cdc90b3b1ff7664af235ab245f6c03d1dd497b376570
    7084702f8025c99a6608a3355ccad5ff5e644ad544121f5d524961f7fe29ceb6
    7e9934a1fc580c3f591c295306ab364c2e7a589e91590ab6334514e4b5c28062
    7ebb008412baaac3afcc8af68b796bf4ca98f367cfd61a815eee82cdffeab196
    886edb8d22973bb04fe3b42d12106029a00b9deab3fb77d8787123327b77ae3b
    8a2426eb4b38af30c6ee764463b8684e0dec400e4472a2a53e6eedf246dab178
    8a6d7e2ab026ff56380235fd9696f5e538e5e426b9374f2ddf3a705e186a7788
    8d44c9e36a505e5c3f125e1702ef7473280bf5bcfa624fe5d3998694b67e0887
    94290680edef0f8ac81d5d4d5b8b680ba5ce821df17c4de62464429552c3360e
    95f88f27ed3448534206406738dfb5c5030fe3d6883c6dda261649357600883f
    9d12cae409e8ea0a546f7945cc629d622400000c3338e4710d9c6084fca9274d
    9fa9ea50db419c75251026708183add8973d9e68a79062f7808b110bef21006e
    a24abbe089556f51fe9c2a51febdcaf893b419556312bcc63515713fc4a52922
    a3b0477fe46f09b0f51c0f651691665c149bc341f5c19996675d849252e86453
    a486474333f05884580dd10c54c95999063c7d1bc22e2cbe3bead604aca0a183
    a524b9af3f172793998e1f9c5c0e9c949cc935624a17ed3364d32bc0391c9382
    aa0e508aeb96f240b551fe92ff4224325ddcdf66f97eef95ac78aec62e53a169
    ab34300942ec02cca7adf2744f6fbc1ab7587060bea09ef92b65b66f89d1ddcd
    b05d4a17d9a02180669d7eb017102dd1a739fb4615759cba94baf944b2aee29c
    b37c79f95c22fc4d657cc89dedd7a870923285da690ad4f5121962492484a142
    bc699639e5515a5fc9da9d442357cc8a9ff310a177e54f1646e002723de49f1d
    be6d8cd5f1405a5e3e8aa492fb8dab41f6521608834d746e6cbc58d2f550f918
    c06f4413a97a5540fbdd40bdbfb194435c154533df7fe388dfdd378084e19c3d
    c585b8addfb7f7991ad74c0bae158aecefc6be5b11c28b020135e0f13040e187
    c66587e9730a6f68e961240038892df656ea99a1a25f4ff8ce556c07b09a4878
    ca289dce66c8b9955c223fe3e906b8f26c12cf53506cebe651b004961f7964af
    cea1aab236de5de8da8954797d846c225bf2ad4f8fe3cd413e60ab029f9e1b3e
    da05cc27a47e755ebe912fafae434df5bd31a5d92658fe1943acc0a2023fab32
    ee473aeda889fd12ac2c76aae06314e5f279cce5f1a736d39bfc097657a82060
    fcb2ee4d630a9a1440417b0c46da5bc1578a388d6aedd12189a23283b60dde7d
    fef548489bd7bea43ae1c2b7755d38a87f4a8b038a466bf7e7b4ac64d665fd62
    ff32a7cbc99eaf6b67695fd94284a9b1b47a76497ef4d10ffc4dae199cc0d7c3

    --- individual provenance logs --

    05a877bdb8617144fe166a13bf51828d4ad1bc11631c360b9e648a9f7df2bbcd
    09574d9c1330c2b1bec9b7bf3a55ab9273bedbfed78affd70a058a1a25e052d2
    0e6b49850d96b4b58ea3759ecea45d273a48f074c4edaaec5e008791d7718781
    102cbfb1e800ef795ba1e1c51a34bff9b463b34c9443435069ddc76970c1e9c9
    1d3817d9cb9fc7de7a3b7a4181daba8de1e52b348280154e8a163c7dd7ee1a7e
    20d36a6f879ba1dd797d4288a4f2e32719d3c674156194c2765a3ec6b43f5e17
    24b3f981c88c747f44ad3372095767cd15dcf81bd6cd2e54328a90a21409df43
    261177a96185166f1c301beacf7350abff03d1b5710be6bfd8c4aff9caffef12
    39f83f5805f32f765003c5e9ee8c69adb3889d9f26dd61bf4aa3a829ac744e2c
    3b39831bcc286c1db44787e21b736378f5847a16b7c39bdac3dd2011e9189dc1
    3dd674b7ad16391629948981a9cb6f6f86937d016861c3e59cd6e6bf3589f3b7
    3e7f19a8a78b51437240f49c499e6e7f89b8d58d4e3ceb9480d4356721645cee
    480868b59e95f3ce2324a7308dba65795e857d34cfbdcea7440a6f2620c6fbf6
    58daa9a51e5dc0911163aa1b98d68c801106734cd29eab9980814057351aeb70
    5a39b7bbe9d1bc46ed2eb7bd76c490b5c85a09369a7cf7dc18fa04532679e9a7

     
    more » « less