skip to main content


Title: A Database for Crystalline Organic Conductors and Superconductors
We present a prototype database for quasi two-dimensional crystalline organic conductors and superconductors based on molecules related to bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF, ET). The database includes crystal structures, calculated electronic structures, and experimentally measured properties such as the superconducting transition temperature and critical magnetic fields. We obtained crystal structures from the Cambridge Structural Database and created a crystal structure analysis algorithm to identify cation molecules and execute tight binding electronic structure calculations. We used manual data entry to encode experimentally measured properties reported in publications. Crystalline organic conductors and superconductors exhibit a wide variety of electronic ground states, particularly those with correlations. We hope that this database will ultimately lead to a better understanding of the fundamental mechanisms of such states.  more » « less
Award ID(s):
1905950
NSF-PAR ID:
10394203
Author(s) / Creator(s):
; ; ; ;
Date Published:
Journal Name:
Crystals
Volume:
12
Issue:
7
ISSN:
2073-4352
Page Range / eLocation ID:
919
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. During in silico crystal structure prediction of organic molecules, millions of candidate structures are often generated. These candidates must be compared to remove duplicates prior to further analysis ( e.g. optimization with electronic structure methods) and ultimately compared with structures determined experimentally. The agreement of predicted and experimental structures forms the basis of evaluating the results from the Cambridge Crystallographic Data Centre (CCDC) blind assessment of crystal structure prediction, which further motivates the pursuit of rigorous alignments. Evaluating crystal structure packings using coordinate root-mean-square deviation (RMSD) for N molecules (or N asymmetric units) in a reproducible manner requires metrics to describe the shape of the compared molecular clusters to account for alternative approaches used to prioritize selection of molecules. Described here is a flexible algorithm called Progressive Alignment of Crystals ( PAC ) to evaluate crystal packing similarity using coordinate RMSD and introducing the radius of gyration ( R g ) as a metric to quantify the shape of the superimposed clusters. It is shown that the absence of metrics to describe cluster shape adds ambiguity to the results of the CCDC blind assessments because it is not possible to determine whether the superposition algorithm has prioritized tightly packed molecular clusters ( i.e. to minimize R g ) or prioritized reduced RMSD ( i.e. via possibly elongated clusters with relatively larger R g ). For example, it is shown that when the PAC algorithm described here uses single linkage to prioritize molecules for inclusion in the superimposed clusters, the results are nearly identical to those calculated by the widely used program COMPACK . However, the lower R g values obtained by the use of average linkage are favored for molecule prioritization because the resulting RMSDs more equally reflect the importance of packing along each dimension. It is shown that the PAC algorithm is faster than COMPACK when using a single process and its utility for biomolecular crystals is demonstrated. Finally, parallel scaling up to 64 processes in the open-source code Force Field X is presented. 
    more » « less
  2. Databases of experimentally-derived metal–organic framework (MOF) crystal structures are useful for large-scale computational screening to identify which MOFs are best-suited for particular applications. However, these crystal structures must be cleaned to identify and/or correct various artifacts. The recently published 2019 CoRE MOF database (Chung et al. , J. Chem. Eng. Data , 2019, 64 , 5985–5998) reported thousands of experimentally-derived crystal structures that were partially cleaned to remove solvent molecules, to identify hundreds of disordered structures (approximately thirty of those were corrected), and to manually correct approximately 100 structures ( e.g. , adding missing hydrogen atoms). Herein, further cleaning of the 2019 CoRE MOF database is performed to identify structures with misbonded or isolated atoms: (i) structures containing an isolated atom, (ii) structures containing atoms too close together ( i.e. , overlapping atoms), (iii) structures containing a misplaced hydrogen atom, (iv) structures containing an under-bonded carbon atom (which might be caused by missing hydrogen atoms), and (v) structures containing an over-bonded carbon atom. This study should not be viewed as the final cleaning of this database, but rather as progress along the way towards the goal of someday achieving a completely cleaned set of experimentally-derived MOF crystal structures. We performed atom typing for all of the accepted structures to identify those structures that can be parameterized by previously reported forcefield precursors (Chen and Manz, RSC Adv ., 2019, 9 , 36492–36507). We report several forcefield precursors ( e.g. , net atomic charges, atom-in-material polarizabilities, atom-in-material dispersion coefficients, electron cloud parameters, etc. ) for more than five thousand MOFs in the 2019 CoRE MOF database. 
    more » « less
  3. Abstract

    2D molecular entities build next-generation electronic devices, where abundant elements of organic molecules are attractive due to the modern synthetic and stimuli control through chemical, conformational, and electronic modifications in electronics. Despite its promising potential, the insufficient control over charge states and electronic stabilities must be overcome in molecular electronic devices. Here, we show the reversible switching of modulated charge states in an exfoliatable 2D-layered molecular conductor based on bis(ethylenedithio)tetrathiafulvalene molecular dimers. The multiple stimuli application of cooling rate, current, voltage, and laser irradiation in a concurrent manner facilitates the controllable manipulation of charge crystal, glass, liquid, and metal phases. The four orders of magnitude switching of electric resistance are triggered by stimuli-responsive charge distribution among molecular dimers. The tunable charge transport in 2D molecular conductors reveals the kinetic process of charge configurations under stimuli, promising to add electric functions in molecular circuitry.

     
    more » « less
  4. Abstract

    Single crystal X-ray diffraction is arguably the most definitive method for molecular structure determination, but the inability to grow suitable single crystals can frustrate conventional X-ray diffraction analysis. We report herein an approach to molecular structure determination that relies on a versatile toolkit of guanidinium organosulfonate hydrogen-bonded host frameworks that form crystalline inclusion compounds with target molecules in a single-step crystallization, complementing the crystalline sponge method that relies on diffusion of the target into the cages of a metal-organic framework. The peculiar properties of the host frameworks enable rapid stoichiometric inclusion of a wide range of target molecules with full occupancy, typically without disorder and accompanying solvent, affording well-refined structures. Moreover, anomalous scattering by the framework sulfur atoms enables reliable assignment of absolute configuration of stereogenic centers. An ever-expanding library of organosulfonates provides a toolkit of frameworks for capturing specific target molecules for their structure determination.

     
    more » « less
  5. We report here the synthesis, characterization, and crystal structures of three perfluoropropylated dibenzo[ a , c ]phenazine constitutional isomers, in which the only difference among them was the positions of the perfluoropropyl substituents. The crystal structures of these perfluropropylated dibenzo[ a , c ]phenazine isomers indicated that the stereo-electronic effect of the perfluoropropyl group on the dibenzo[ a , c ]phenazine molecule plays a crucial role in determining the crystal-packing motif in the solid state. Our results from both X-ray crystallography and computational approaches revealed that the positions of the perfluoropropyl groups on the dibenzo[ a , c ]phenazine ring significantly affected the electrostatic potential distribution along the aromatic ring surface, resulting in drastic changes in the molecular packing in the solid state, from herringbone to lamellar crystal packing, among these three constitutional isomers. Simple topological consideration of the molecular packing in the solid state was coincidently cooperative with the changes in the electrostatic potential distributions, where localized partial positive and partial negative charges perhaps dominated the intermolecular interactions between the aromatic rings. Together, the perfluoropropylation on the dibenzo[ a , c ]phenazine ring provided us with a fortunate scenario, wherein the molecular topological structure and electrostatic potential worked together to facilitate the formation of the desired lamellar π–π stacked crystal packing. Meanwhile, electrochemistry, UV-visible absorption and emission spectra, and the computational chemistry results pointed out that there were only minor to moderate changes in the electronic properties of the molecules upon changing the position of the perfluoroalkylation on the dibenzo[ a , c ]phenazine core. While controlling the solid-state structure of aromatics by design still has a long way to go, we hope that our work will ignite a spark that can potentially spread into the field of the design of organic solid-state materials. 
    more » « less