Here we review the systematics of the threadsnakes of the
Morphological and Molecular Evidence Support Elevating Erythroxylum macrophyllum var. savannarum (Erythroxylaceae) to Specific Status
Erythroxylum macrophyllum is a morphologically variable and widely distributed species complex in Central and South America with several sub-specific taxa and numerous species included in its synonymy. A single variety grows in the Colombo-Venezuelan savanna region which can be distinguished from the rest of the E. macrophyllum complex by the size of leaves, cataphyll and stipule characteristics, and shape of calyx lobes. A molecular phylogeny reconstructed from 519 nuclear genes also reveals that the savanna variety is more closely related to E. acuminatum and E. pauciflorum than E. macrophyllum. This phylogenomic evidence also suggests Erythroxylum sect. Macrocalyx, to which E. macrophyllum belongs, is a polyphyletic taxonomic section. We thus propose elevating this variety to specific status, as Erythroxylum savannarum. We provide an updated taxonomic description, information about its habitat and distribution, and justify its informal IUCN cat- egorization of Near Threatened (NT)
more »
« less
- Award ID(s):
- 2010821
- NSF-PAR ID:
- 10400004
- Date Published:
- Journal Name:
- Systematic botany
- Volume:
- 47
- Issue:
- 2
- ISSN:
- 0363-6445
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
more » « less
Epictia goudotii Species complex in Middle and northern South America using external morphology and molecular data. Two species,Epictia goudotii andE. magnamaculata , are currently recognized from that region, but we provide evidence for recognizing, as species, three other nominal forms usually treated as subspecies ofE. goudotii :E. ater, E. bakewelli , andE. phenops . Thus, together withE. columbi (Bahamas), we recognize six species in theEpictia goudotii Species complex. BecauseE. albifrons from northern South America has been confused withE. goudotii in the past, we also briefly discuss the taxonomic status of that species and its apparent close relativeE. tenella , which are not members of theE. goudotii complex. -
more » « less
Abstract Although savanna woody encroachment has become a global phenomenon, relatively little is known about its effects on multiple dimensions and levels of savanna biodiversity.
Using a combination of field surveys, a species‐level phylogeny, and functional metrics drawn from a morphological dataset, we evaluated how the progressive increase in tree cover in a fire‐suppressed savanna landscape affects the taxonomic, functional, and phylogenetic diversity of neotropical ant communities, at both the alpha and beta levels. Ants were sampled along an extensive tree cover gradient, ranging from open savannas to forests established in former savanna areas.
Variation in tree cover had a significant influence on all facets of diversity at the beta level, whereas at the alpha level tree cover variation affected the taxonomic and functional but not the phylogenetic diversity of the ant communities.
In general, ant community responses to variation in tree cover were largely non‐linear as differences in taxonomic alpha diversity and in the taxonomic, functional, and phylogenetic composition of the sampled communities were often much stronger at the savanna/forest transition than at any other part of the gradient. This indicates that savanna ant communities switch rapidly to an alternative state once the savanna turns into forest.
Ant communities in the newly formed forest areas lacked many of the species typical of the savanna habitats, suggesting that the maintenance of a fire suppression policy is likely to result in a decrease in ant diversity and in the homogenisation of the ant fauna at the landscape scale.
-
Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than ThiaminABSTRACT Vitamin B 1 (thiamin) is a cofactor for critical enzymatic processes and is scarce in surface oceans. Several eukaryotic marine algal species thought to rely on exogenous thiamin are now known to grow equally well on the precursor 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP), including the haptophyte Emiliania huxleyi . Because the thiamin biosynthetic capacities of the diverse and ecologically important haptophyte lineage are otherwise unknown, we investigated the pathway in transcriptomes and two genomes from 30 species representing six taxonomic orders. HMP synthase is missing in data from all studied taxa, but the pathway is otherwise complete, with some enzymatic variations. Experiments on axenic species from three orders demonstrated that equivalent growth rates were supported by 1 µM HMP or thiamin amendment. Cellular thiamin quotas were quantified in the oceanic phytoplankter E. huxleyi using the thiochrome assay. E. huxleyi exhibited luxury storage in standard algal medium [(1.16 ± 0.18) × 10 −6 pmol thiamin cell −1 ], whereas quotas in cultures grown under more environmentally relevant thiamin and HMP supplies [(2.22 ± 0.07) × 10 −7 or (1.58 ± 0.14) × 10 −7 pmol thiamin cell −1 , respectively] were significantly lower than luxury values and prior estimates. HMP and its salvage-related analog 4-amino-5-aminomethyl-2-methylpyrimidine (AmMP) supported higher growth than thiamin under environmentally relevant supply levels. These compounds also sustained growth of the stramenopile alga Pelagomonas calceolata . Together with identification of a salvage protein subfamily (TENA_E) in multiple phytoplankton, the results indicate that salvaged AmMP and exogenously acquired HMP are used by several groups for thiamin production. Our studies highlight the potential importance of thiamin pathway intermediates and their analogs in shaping phytoplankton community structure. IMPORTANCE The concept that vitamin B 1 (thiamin) availability in seawater controls the productivity and structure of eukaryotic phytoplankton communities has been discussed for half a century. We examined B 1 biosynthesis and salvage pathways in diverse phytoplankton species. These comparative genomic analyses as well as experiments show that phytoplankton thought to require exogenous B 1 not only utilize intermediate compounds to meet this need but also exhibit stronger growth on these compounds than on thiamin. Furthermore, oceanic phytoplankton have lower cellular thiamin quotas than previously reported, and salvage of intermediate compounds is likely a key mechanism for meeting B 1 requirements under environmentally relevant scenarios. Thus, several lines of evidence now suggest that availability of specific precursor molecules could be more important in structuring phytoplankton communities than the vitamin itself. This understanding of preferential compound utilization and thiamin quotas will improve biogeochemical model parameterization and highlights interaction networks among ocean microbes.more » « less
-
Shank, Elizabeth Anne (Ed.)ABSTRACT Microbial communities occupy diverse niches in nature, and community members routinely exchange a variety of nutrients among themselves. While large-scale metagenomic and metabolomic studies shed some light on these exchanges, the contribution of individual species and the molecular details of specific interactions are difficult to track. In this study, we follow the exchange of vitamin B 1 (thiamin) and its intermediates between microbes within synthetic cocultures of Escherichia coli and Vibrio anguillarum . Thiamin contains two moieties, 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) and 4-methyl-5-(2-hydroxyethyl)thiazole (THZ), which are synthesized by distinct pathways using enzymes ThiC and ThiG, respectively, and then coupled by ThiE to form thiamin. Even though E. coli Δ thiC , Δ thiE , and Δ thiG mutants are thiamin auxotrophs, we observed that cocultures of Δ thiC -Δ thiE and Δ thiC -Δ thiG mutants are able to grow in a thiamin-deficient medium, whereas the Δ thiE -Δ thiG coculture does not. Further, the exchange of thiamin and its intermediates in V. anguillarum cocultures and in mixed cocultures of V. anguillarum and E. coli revealed that there exist specific patterns for thiamin metabolism and exchange among these microbes. Our findings show that HMP is shared more frequently than THZ, concurrent with previous observations that free HMP and HMP auxotrophy is commonly found in various environments. Furthermore, we observe that the availability of exogenous thiamin in the media affects whether these strains interact with each other or grow independently. These findings collectively underscore the importance of the exchange of essential metabolites as a defining factor in building and modulating synthetic or natural microbial communities. IMPORTANCE Vitamin B 1 (thiamin) is an essential nutrient for cellular metabolism. Microorganisms that are unable to synthesize thiamin either fully or in part exogenously obtain it from their environment or via exchanges with other microbial members in their community. In this study, we created synthetic microbial cocultures that rely on sharing thiamin and its biosynthesis intermediates and observed that some of them are preferentially exchanged. We also observed that the coculture composition is dictated by the production and/or availability of thiamin and its intermediates. Our studies with synthetic cocultures provide the molecular basis for understanding thiamin sharing among microorganisms and lay out broad guidelines for setting up synthetic microbial cocultures by using the exchange of an essential metabolite as their foundation.more » « less
-
Small-mammal faunas of tropical savannas consist of endemic assemblages of murid rodents, small marsupials, and insectivores on four continents. Small mammals in tropical savannas are understudied compared to other tropical habitats and other taxonomic groups (e.g., Afrotropical megafauna or Neotropical rainforest mammals). Their importance as prey, ecosystem engineers, disease reservoirs, and declining members of endemic biodiversity in tropical savannas compels us to understand the factors that regulate their abundance and diversity. We reviewed field studies published in the last 35 years that examined, mostly experimentally, the effects of varying three primary endogenous disturbances in tropical savanna ecosystems—fire, large mammalian herbivory (LMH), and drought—on abundance and diversity of non-volant small mammals. These disturbances are most likely to affect habitat structure (cover or concealment), food availability, or both, for ground-dwelling small mammalian herbivores, omnivores, and insectivores. Of 63 studies (included in 55 published papers) meeting these criteria from the Afrotropics, Neotropics, and northern Australia (none was found from southern Asia), 29 studies concluded that small mammals responded (mostly negatively) to a loss of cover (mostly from LMH and fire); four found evidence of increased predation on small mammals in lower-cover treatments (e.g., grazed or burned). Eighteen studies concluded a combination of food- and cover-limitation explained small-mammal responses to endogenous disturbances. Only two studies concluded small-mammal declines in response to habitat-altering disturbance were caused by food limitation and not related to cover reduction. Evidence to date indicates that abundance and richness of small savanna mammals, in general (with important exceptions), is enhanced by vegetative cover (especially tall grass, but sometimes shrub cover) as refugia for these prey species amid a “landscape of fear,” particularly for diurnal, non-cursorial, and non-fossorial species. These species have been called “decreasers” in response to cover reduction, whereas a minority of small-mammal species have been shown to be “increasers” or disturbance-tolerant. Complex relationships between endogenous disturbances and small-mammal food resources are important secondary factors, but only six studies manipulated or measured food resources simultaneous to habitat manipulations. While more such studies are needed, designing effective ones for cryptic consumer communities of omnivorous dietary opportunists is a significant challenge.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- The DOI is not currently available.
