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1. Structure of Polymer-Grafted Nanoparticle Melts

   https://doi.org/10.1021/acsnano.0c06134  

   Midya, Jiarul; Rubinstein, Michael; Kumar, Sanat K.; Nikoubashman, Arash (November 2020, ACS Nano)

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2. Detecting bound polymer layers in attractive polymer–nanoparticle hybrids

   https://doi.org/10.1039/D1NR02395K  

   Emamy, Hamed; Starr, Francis W.; Kumar, Sanat K. (August 2021, Nanoscale)

   When polymer–nanoparticle (NP) attractions are sufficiently strong, a bound polymer layer with a distinct dynamic signature spontaneously forms at the NP interface. A similar phenomenon occurs near a fixed attractive substrate for thin polymer films. While our previous simulations fixed the NPs to examine the dilute limit, here, we allow the NP to move. Our goal is to investigate how NP mobility affects the signature of the bound layer. For small NPs that are relatively mobile, the bound layer is slaved to the motion of the NP, and the signature of the bound layer relaxation in the intermediate scattering function essentially disappears. The slow relaxation of the bound layer can be recovered when the scattering function is measured in the NP reference frame, but this process would be challenging to implement in experimental systems with multiple NPs. Instead, we use the counterintuitive result that the NP mass affects its mobility in the nanoscale limit, along with the more expected result that the bound layer increases the effective NP mass, to suggest that the signature of the bound polymer manifests as a change in NP diffusivity. These findings allow us to rationalize and quantitatively understand the results of recent experiments focused on measuring NP diffusivity with either physically adsorbed or chemically end-grafted chains. 

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3. Effect of polymer–nanoparticle interactions on solvent-driven infiltration of polymer (SIP) into nanoparticle packings: a molecular dynamics study

   https://doi.org/10.1039/c9me00148d  

   Venkatesh, R. Bharath; Zhang, Tianren; Manohar, Neha; Stebe, Kathleen J.; Riggleman, Robert A.; Lee, Daeyeon (March 2020, Molecular Systems Design & Engineering)

   Naturally occurring nanocomposites like nacre owe their exceptional mechanical properties to high loadings of platelets that are bridged by small volume fractions of polymers. Polymer infiltration into dense assemblies of nanoparticles provides a powerful and potentially scalable approach to manufacture bio-inspired nanocomposites that mimic nacre's architecture. Solvent-driven infiltration of polymers (SIP) into nanoparticle packings formed on top of glassy polymer films is induced via capillary condensation of a solvent in the interstitial voids between nanoparticles (NP), followed by plasticization and transport of polymers into the liquid-filled pores, leading to the formation of the nanocomposite structure. To understand the effect of polymer–nanoparticle interactions on the dynamics of polymer infiltration in SIP, we perform molecular dynamics simulations. The mechanism of polymer infiltration and the influence of interactions between polymer and NPs on the dynamics of the process are investigated. Depending on the strength of interaction, polymer infiltration either follows (a) dissolution-dominated infiltration where plasticized polymer chains remain solvated in the pores and rapidly diffuse into the packing or (b) adhesion-dominated transport where the chains adsorb onto the nanoparticle surface and move slowly through the nanoparticle film as a well-defined front. A non-monotonic trend emerges as the adhesion strength is increased; the infiltration of chains becomes faster with the co-operative effect of adhesion and dissolution as adhesion increases but eventually slows down when the polymer–nanoparticle adhesion dominates. 

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4. Directed Nanoparticle Assembly through Polymer Crystallization

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   Mei, Shan; Staub, Mark; Li, Christopher Y. (October 2019, Chemistry – A European Journal)
5. Structural Assessment of Polymer-Enzyme Complex Nanoparticle Stability

   Murthy, N. Sanjeeva; Upadhya, Rahul; Kosuri, Shashank; Tamasi, Matthew; Gormley, Adam J. (April 2022, Transactions of the Society for Biomaterials)

   Statement of Purpose Hybrid nanoparticles in which a polymer is used to stabilize the secondary structure of enzyme provide a means to preserve its activity in non-native environments. This approach is illustrated here with horseradish peroxidase (HRP), an important heme enzyme used in medical diagnostic, biosensing, and biotechnological applications. Polymer chaperones in these polymer-enzyme complex (PEC) nanoparticles can enhance the utility of enzymes in unfavorable environments. Structural analysis of the PECs is a crucial link in the machine-learning driven iterative optimization cycle of polymer synthesis and testing. Here, we discuss the utility of small-angle X-ray scattering (SAXS) and quartz crystal microbalance with dissipation (QCMD) for evaluating PECs. Materials and Methods Six polymers were synthesized by automated photoinduced electron/energy transfer-reversible addition-fragmentation chain-transfer (PET-RAFT) polymerization directly in 96-well plates.1 Multiple molar ratios of enzyme:polymer (1:1, 1:5, 1:10, and 1:50) were characterized. HRP was mixed with the polymer and heated to 65 °C for 1 hr to form PECs. Enzyme assay and circular dichroism measurements were performed along with SAXS and QCMD to understand polymer-protein interactions. SAXS data were obtained at NSLS-II beamline 16-ID. Results and Discussion SAXS data were analyzed to determine the radius of gyration (Rg), Porod exponent and pair distance distribution functions (P(r)) (Figure 1). Rg, which corresponds to the size of the PEC nanoparticles, is sensitive to the polydispersity of the solution and does not change significantly in the presence of the polymer GEP1. Notably, the maximal dimension does not change as significantly upon heating to denaturation in the case of the PEC as it does with HRP alone. The effect of denaturation induced by heating seems to depend on the molar ratio of the polymer to enzyme. The Porod exponent, which is related to roughness, decreased from about 4 to 3 upon complexation indicating polymer binding to the enzyme’s surface. These were confirmed by modeling the structures of the HRP, the polymer and the PEC were modeled using DAMMIF/DAMMIN and MONSA (ATSAS software). The changes observed in the structure could be correlated to the measured enzymatic activity. Figure 2 shows the evolution of the PEC when the polymer is deposited onto the enzyme immobilized on Figure 1. P(r) plots for PEC vs. HRP before and after heating, illustrating the increased enzymatic stability due to polymer additives. gold-coated QCM sensors. The plots show the changes in frequency (f) and dissipation (D) with time as HRP is first deposited and is followed by the adsorption of the polymer. Large f and D show that the polymer forms a complex with HRP. Such changes were not observed with negative controls, Pluronics and poly(ethylene glycol). Comparison of the data from free particles in solution with QCM data from immobilized enzymes, shows that the conformation of the complexes in solution and surface-bound HRP could be different. This way, we were able to explore the various states of complex formation under different conditions with different polymers. Figure 2. QCMD data showing the interaction between the immobilized HRP and the polymer. 3rd and 5th harmonics are plotted (blue -f; red-D). Conclusion SAXS and QCMD data show that stabilization of the enzyme activity by inhibiting the unraveling of the secondary structure as seen in size, surface roughness, pair distribution function and percent helicity. Acknowledgment This work was supported by NSF grant 2009942. References [1] Tamasi, M, et al. Adv Intell Syst 2020, 2(2): 1900126. 

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