Weakly supervised pose estimation can be used to assist unsupervised body part segmentation and concealed item detection. The accuracy of pose estimation is essential for precise body part segmentation and accurate concealed item detection. In this paper, we show how poses obtained from an RGB pretrained 2D pose detector can be modified for the backscatter image domain. The 2D poses are refined using RANSAC bundle adjustment to minimize the projection loss in 3D. Furthermore, we show how 2D poses can be optimized using a newly proposed 3D-to-2D pose correction network weakly supervised with pose prior regularizers and multi-view pose and posture consistency losses. The optimized 2D poses are used to segment human body parts. We then train a body-part-aware anomaly detection network to detect foreign (concealed threat) objects on segmented body parts. Our work is applied to the TSA passenger screening dataset containing millimeter wave scan images of airport travelers annotated with only binary labels that indicate whether a foreign object is concealed on a body part. Our proposed approach significantly improves the detection accuracy of TSA 2D backscatter images in existing works with a state-of-the-art performance of 97% F1-score, 0.0559 log-loss on the TSA-PSD test-set, and a 74% reduction in 2D pose error.
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3D Domain Adaptive Instance Segmentation Via Cyclic Segmentation GANs
3D instance segmentation for unlabeled imaging modalities is a challenging but essential task as collecting expert annotation can be expensive and time-consuming. Existing works segment a new modality by either deploying pre-trained models optimized on diverse training data or sequentially conducting image translation and segmentation with two relatively independent networks. In this work, we propose a novel Cyclic Segmentation Generative Adversarial Network (CySGAN) that conducts image translation and instance segmentation simultaneously using a unified network with weight sharing. Since the image translation layer can be removed at inference time, our proposed model does not introduce additional computational cost upon a standard segmentation model. For optimizing CySGAN, besides the CycleGAN losses for image translation and supervised losses for the annotated source domain, we also utilize self-supervised and segmentation-based adversarial objectives to enhance the model performance by leveraging unlabeled target domain images. We benchmark our approach on the task of 3D neuronal nuclei segmentation with annotated electron microscopy (EM) images and unlabeled expansion microscopy (ExM) data. The proposed CySGAN outperforms pre-trained generalist models, feature-level domain adaptation models, and the baselines that conduct image translation and segmentation sequentially. Our implementation and the newly collected, densely annotated ExM zebrafish brain nuclei dataset, named NucExM, are publicly available at https://connectomics-bazaar.github.io/proj/CySGAN/index.html.
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- Award ID(s):
- 2124179
- NSF-PAR ID:
- 10438971
- Date Published:
- Journal Name:
- IEEE Journal of Biomedical and Health Informatics
- ISSN:
- 2168-2194
- Page Range / eLocation ID:
- 1 to 10
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1109/JBHI.2023.3281332
