skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Impacts of heavy metal pollution on the ionomes and transcriptomes of Western mosquitofish ( Gambusia affinis )
Abstract Our understanding of the mechanisms mediating the resilience of organisms to environmental change remains lacking. Heavy metals negatively affect processes at all biological scales, yet organisms inhabiting contaminated environments must maintain homeostasis to survive. Tar Creek in Oklahoma, USA, contains high concentrations of heavy metals and an abundance of Western mosquitofish (Gambusia affinis), though several fish species persist at lower frequency. To test hypotheses about the mechanisms mediating the persistence and abundance of mosquitofish in Tar Creek, we integrated ionomic data from seven resident fish species and transcriptomic data from mosquitofish. We predicted that mosquitofish minimize uptake of heavy metals more than other Tar Creek fish inhabitants and induce transcriptional responses to detoxify metals that enter the body, allowing them to persist in Tar Creek at higher density than species that may lack these responses. Tar Creek populations of all seven fish species accumulated heavy metals, suggesting mosquitofish cannot block uptake more efficiently than other species. We found population‐level gene expression changes between mosquitofish in Tar Creek and nearby unpolluted sites. Gene expression differences primarily occurred in the gill, where we found upregulation of genes involved with lowering transfer of metal ions from the blood into cells and mitigating free radicals. However, many differentially expressed genes were not in known metal response pathways, suggesting multifarious selective regimes and/or previously undocumented pathways could impact tolerance in mosquitofish. Our systems‐level study identified well characterized and putatively new mechanisms that enable mosquitofish to inhabit heavy metal‐contaminated environments.  more » « less
Award ID(s):
1931650 1931657 2423844
PAR ID:
10445986
Author(s) / Creator(s):
 ;  ;  ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
Molecular Ecology
Volume:
31
Issue:
5
ISSN:
0962-1083
Page Range / eLocation ID:
p. 1527-1542
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Liu, Shuang-Jiang (Ed.)
    ABSTRACT Natural attenuation of heavy metals occurs via coupled microbial iron cycling and metal precipitation in creeks impacted by acid mine drainage (AMD). Here, we describe the isolation, characterization, and genomic sequencing of two iron-oxidizing bacteria (FeOB) species: Thiomonas ferrovorans FB-6 and Thiomonas metallidurans FB-Cd, isolated from slightly acidic (pH 6.3), Fe-rich, AMD-impacted creek sediments. These strains precipitated amorphous iron oxides, lepidocrocite, goethite, and magnetite or maghemite and grew at a pH optimum of 5.5. While Thiomonas spp. are known as mixotrophic sulfur oxidizers and As oxidizers, the FB strains oxidized Fe, which suggests they can efficiently remove Fe and other metals via coprecipitation. Previous evidence for Thiomonas sp. Fe oxidation is largely ambiguous, possibly because of difficulty demonstrating Fe oxidation in heterotrophic/mixotrophic organisms. Therefore, we also conducted a genomic analysis to identify genetic mechanisms of Fe oxidation, other metal transformations, and additional adaptations, comparing the two FB strain genomes with 12 other Thiomonas genomes. The FB strains fall within a relatively novel group of Thiomonas strains that includes another strain (b6) with solid evidence of Fe oxidation. Most Thiomonas isolates, including the FB strains, have the putative iron oxidation gene cyc2 , but only the two FB strains possess the putative Fe oxidase genes mtoAB . The two FB strain genomes contain the highest numbers of strain-specific gene clusters, greatly increasing the known Thiomonas genetic potential. Our results revealed that the FB strains are two distinct novel species of Thiomonas with the genetic potential for bioremediation of AMD via iron oxidation. IMPORTANCE As AMD moves through the environment, it impacts aquatic ecosystems, but at the same time, these ecosystems can naturally attenuate contaminated waters via acid neutralization and catalyzing metal precipitation. This is the case in the former Ronneburg uranium-mining district, where AMD impacts creek sediments. We isolated and characterized two iron-oxidizing Thiomonas species that are mildly acidophilic to neutrophilic and that have two genetic pathways for iron oxidation. These Thiomonas species are well positioned to naturally attenuate AMD as it discharges across the landscape. 
    more » « less
  2. The lower 12·875 km of the Passaic River is heavily contaminated due to industrial activities – specifically heavy metal extraction from chromium-ore-processing plants and production of pesticides and herbicides. Conventional methods for remediating contaminated sediments have limited application due to the tidal action and urban area of the contaminated section of the Passaic River. Hence, this study proposes an in situ technology using ultrasound and ozone nanobubbles to remediate the sediments. Ultrasound is capable of desorbing heavy metals from soil, and ozone can oxidise the released heavy metals to a form that is mobile for ease of extraction. Nanobubbles are used as an effective ozone delivery method for the oxidation of heavy metals. Bench-scale tests were performed to evaluate the feasibility of the proposed technology. Ozone nanobubbles increased the solubility of ozone in water and reduced wastage. Also, due to the high ozone concentrations in water, chromium oxidation increased. A synthetic soil with a grain size distribution similar to that of actual river sediments was artificially contaminated with chromium and used in this research. Test results showed a 97·54% chromium removal efficiency, suggesting the feasibility of the proposed technology for pilot-scale studies. 
    more » « less
  3. Bomblies, K (Ed.)
    The gene balance hypothesis proposes that selection acts on the dosage (i.e. copy number) of genes within dosage-sensitive portions of networks, pathways, and protein complexes to maintain balanced stoichiometry of interacting proteins, because perturbations to stoichiometric balance can result in reduced fitness. This selection has been called dosage balance selection. Dosage balance selection is also hypothesized to constrain expression responses to dosage changes, making dosage-sensitive genes (those encoding members of interacting proteins) experience more similar expression changes. In allopolyploids, where whole-genome duplication involves hybridization of diverged lineages, organisms often experience homoeologous exchanges that recombine, duplicate, and delete homoeologous regions of the genome and alter the expression of homoeologous gene pairs. Although the gene balance hypothesis makes predictions about the expression response to homoeologous exchanges, they have not been empirically tested. We used genomic and transcriptomic data from 6 resynthesized, isogenic Brassica napus lines over 10 generations to identify homoeologous exchanges, analyzed expression responses, and tested for patterns of genomic imbalance. Groups of dosage-sensitive genes had less variable expression responses to homoeologous exchanges than dosage-insensitive genes, a sign that their relative dosage is constrained. This difference was absent for homoeologous pairs whose expression was biased toward the B. napus A subgenome. Finally, the expression response to homoeologous exchanges was more variable than the response to whole-genome duplication, suggesting homoeologous exchanges create genomic imbalance. These findings expand our knowledge of the impact of dosage balance selection on genome evolution and potentially connect patterns in polyploid genomes over time, from homoeolog expression bias to duplicate gene retention. 
    more » « less
  4. Lead and zinc mining was booming in the early 1900s in and near Joplin, Missouri; a town within the Tri-State Mining District, USA. After the ore became depleted, mining companies moved out, leaving a profoundly disturbed land. Presently, over 90% of the land has been remediated. We collected sediment samples along two creeks flowing through the historically contaminated area that have been identified as major contributors of metals to downstream reservoirs, Center Creek (14 samples) and Turkey Creek (30 samples). Sediment metal content was determined by aqua regia extraction, the potentially bioavailable fraction by 0.11 M acetic acid extraction, and toxicity by ΣPEC-QCd,Pb,Zn. Zinc and lead content in sediments were high in both creeks notwithstanding remediation actions; e.g., median concentrations of 521 mg/kg Pb and 5425 mg/kg Zn in Center Creek, corresponding to 19 and 52 times the background concentration. The metals’ distribution followed no discernible pattern downstream. The potentially bioavailable fraction varied between 0.36% (Pb, Center Creek) and 4.96% (Zn, Turkey Creek). High toxicity was found in 40% of the samples in Turkey Creek and 78.5% of the samples in Center Creek. While this level of toxicity would likely affect aquatic organisms, its limited mobility under alkaline conditions suggests a lesser threat to humans. On the other hand, this high toxicity will likely persist in sediments for at least a few decades, based on their high metal content and low mobility. 
    more » « less
  5. Summary Bryophytes harbour microbiomes, including diverse communities of fungi. The molecular mechanisms by which perennial mosses interact with these fungal partners along their senescence gradients are unknown, yet this is an ideal system to study variation in gene expression associated with trophic state transitions. We investigated differentially expressed genes of fungal communities and their hostDicranum scopariumacross its naturally occurring senescence gradient using a metatranscriptomic approach. Higher activity of fungal nutrient‐related (carbon, nitrogen, phosphorus and sulfur) transporters and Carbohydrate‐Active enZyme (CAZy) genes was detected toward the bottom, partially decomposed, layer of the moss. The most prominent variation in the expression levels of fungal nutrient transporters was from inorganic nitrogen‐related transporters, whereas the breakdown of organonitrogens was detected as the most enriched gene ontology term for the hostD. scoparium, for those transcripts having higher expression in the partially decomposed layer. The abundance of bacterial rRNA transcripts suggested that more living members ofCyanobacteriaare associated with the photosynthetic layer ofD. scoparium, while members ofRhizobialesare detected throughout the gametophytes. Plant genes for specific fungal–plant communication, including defense responses, were differentially expressed, suggesting that different genetic pathways are involved in plant‐microbe crosstalk in photosynthetic tissues compared to partially decomposed tissues. 
    more » « less