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1. Hydrological seasonality is a major driver of ecosystem metabolism in tropical nonwadeable rivers

   https://doi.org/10.1002/lno.70132  

   Castillo, María M; Ulseth, Amber J; Jarquín‐Sánchez, Aarón; Álvarez‐Merino, Arturo; Capps, Krista A (July 2025, Limnology and Oceanography)

   Abstract Studies of annual patterns of ecosystem metabolism in rivers have primarily been conducted in temperate ecosystems, and little is known about metabolic regimes of tropical rivers. We estimated ecosystem metabolism in four nonwadeable rivers in southern México that varied in size and the extent of human disturbance. The smaller rivers with limited human disturbance showed reduced gross primary production (GPP; 1.0 and 1.7 g O₂m⁻² d⁻¹), ecosystem respiration (ER; − 1.9 g O₂m⁻²d⁻¹), and net ecosystem production (NEP) approaching autotrophy (− 0. 8 and − 0.3 g O₂m⁻²d⁻¹) relative to rivers draining larger, more disturbed catchments (GPP, 1.2 and 2.7 g O₂m⁻²d⁻¹; ER, − 5.7 and − 6.9 g O₂m⁻²d⁻¹; NEP, − 3.8 and − 3.7 g O₂m⁻²d⁻¹). In all rivers, GPP and ER varied seasonally with discharge. The smaller rivers exhibited a distinct pattern of greater and sustained GPP during periods of low discharge, a seasonal metabolic regime we describe as “flow decline.” In general, process–discharge relationships exhibited thresholds, with an initial decline in GPP and ER, with increasing discharge and an increase in ER at higher flows. Relative to larger and more disturbed watersheds, smaller rivers showed a more constrained metabolic fingerprint. Annual NEP (− 1033 and − 641 g C m⁻² yr⁻¹) in the larger rivers was more negative than the global average, supporting evidence from other studies that tropical rivers are greater contributors to CO²emissions than temperate ecosystems. Our study indicates that hydrological seasonality is a major driver of metabolism in tropical rivers. 

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2. Freshwater Biogeochemical Hotspots: High Primary Production and Ecosystem Respiration in Shallow Waterbodies

   https://doi.org/10.1029/2023GL106689  

   Rabaey, Joseph_S; Holgerson, Meredith_A; Richardson, David_C; Andersen, Mikkel_R; Bansal, Sheel; Bortolotti, Lauren_E; Cotner, James_B; Hornbach, Daniel_J; Martinsen, Kenneth_T; Moody, Eric_K; et al (July 2024, Geophysical Research Letters)

   Abstract Ponds, wetlands, and shallow lakes (collectively “shallow waterbodies”) are among the most biogeochemically active freshwater ecosystems. Measurements of gross primary production (GPP), respiration (R), and net ecosystem production (NEP) are rare in shallow waterbodies compared to larger and deeper lakes, which can bias our understanding of lentic ecosystem processes. In this study, we calculated GPP, R, and NEP in 26 small, shallow waterbodies across temperate North America and Europe. We observed high rates of GPP (mean 8.4 g O₂ m⁻³ d⁻¹) and R (mean −9.1 g O₂ m⁻³ d⁻¹), while NEP varied from net heterotrophic to autotrophic. Metabolism rates were affected by depth and aquatic vegetation cover, and the shallowest waterbodies had the highest GPP, R, and the most variable NEP. The shallow waterbodies from this study had considerably higher metabolism rates compared to deeper lakes, stressing the importance of these systems as highly productive biogeochemical hotspots. 

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3. High rates of daytime river metabolism are an underestimated component of carbon cycling

   https://doi.org/10.1038/s43247-022-00607-2  

   Tromboni, Flavia; Hotchkiss, Erin R.; Schechner, Anne E.; Dodds, Walter K.; Poulson, Simon R.; Chandra, Sudeep (November 2022, Communications Earth & Environment)

   Abstract River metabolism and, thus, carbon cycling are governed by gross primary production and ecosystem respiration. Traditionally river metabolism is derived from diel dissolved oxygen concentrations, which cannot resolve diel changes in ecosystem respiration. Here, we compare river metabolism derived from oxygen concentrations with estimates from stable oxygen isotope signatures (δ¹⁸O₂) from 14 sites in rivers across three biomes using Bayesian inverse modeling. We find isotopically derived ecosystem respiration was greater in the day than night for all rivers (maximum change of 113 g O₂ m⁻² d⁻¹, minimum of 1 g O₂ m⁻² d⁻¹). Temperature (20 °C) normalized rates of ecosystem respiration and gross primary production were 1.1 to 87 and 1.5 to 22-fold higher when derived from oxygen isotope data compared to concentration data. Through accounting for diel variation in ecosystem respiration, our isotopically-derived rates suggest that ecosystem respiration and microbial carbon cycling in rivers is more rapid than predicted by traditional methods. 

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4. Coupled primary production and respiration in a large river contrasts with smaller rivers and streams

   https://doi.org/10.1002/lno.12435  

   Roley, Sarah S.; Hall, Jr., Robert O.; Perkins, William; Garayburu‐Caruso, Vanessa A.; Stegen, James C. (October 2023, Limnology and Oceanography)

   Abstract Although time series in ecosystem metabolism are well characterized in small and medium rivers, patterns in the world's largest rivers are almost unknown. Large rivers present technical difficulties, including depth measurements, gas exchange (, ) estimates, and the presence of large dams, which can supersaturate gases. We estimated reach‐scale metabolism for the Hanford Reach of the Columbia River (Washington state, USA), a free‐flowing stretch with an average discharge of 3173 . We calculated from semi‐empirical models and directly estimated it from tracer measurements. We fixed at the median value from these calculations (0.5 ), and used maximum likelihood to estimate reach‐scale, open‐channel metabolism. Both gross primary production (GPP) and ecosystem respiration (ER) were high (GPP range: 0.3–30.8 g , ER range: 0.8–30.6 g ), with peak GPP and ER occurring in the late summer or early fall. GPP increased exponentially with temperature, consistent with metabolic theory, while light was seasonally saturating. Annual average GPP, estimated at 1500 g carbon , was in the top 2% of estimates for other rivers. GPP and ER were tightly coupled and 90% of GPP was immediately respired, resulting in net ecosystem production near 0. Patterns in the Hanford Reach contrast with those in small‐medium rivers, suggesting that metabolism magnitudes and patterns in large rivers may not be simply scaled from knowledge of smaller rivers. 

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5. Light and flow regimes regulate the metabolism of rivers

   https://doi.org/10.1073/pnas.2121976119  

   Bernhardt, Emily S.; Savoy, Phil; Vlah, Michael J.; Appling, Alison P.; Koenig, Lauren E.; Hall, Robert O.; Arroita, Maite; Blaszczak, Joanna R.; Carter, Alice M.; Cohen, Matt; et al (February 2022, Proceedings of the National Academy of Sciences)

   Mean annual temperature and mean annual precipitation drive much of the variation in productivity across Earth's terrestrial ecosystems but do not explain variation in gross primary productivity (GPP) or ecosystem respiration (ER) in flowing waters. We document substantial variation in the magnitude and seasonality of GPP and ER across 222 US rivers. In contrast to their terrestrial counterparts, most river ecosystems respire far more carbon than they fix and have less pronounced and consistent seasonality in their metabolic rates. We find that variation in annual solar energy inputs and stability of flows are the primary drivers of GPP and ER across rivers. A classification schema based on these drivers advances river science and informs management. 

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