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1. QA-GNN: Reasoning with Language Models and Knowledge Graphs for Question Answering

   Yasunaga, Michihiro; Ren, Hongyu; Bosselut, Antoine; Liang, Percy; Leskovec, Jure (January 2021, North American Chapter of the Association for Computational Linguistics (NAACL))

   null (Ed.)

   The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge from large KGs, and (ii) perform joint reasoning over the QA context and KG. Here we propose a new model, QA-GNN, which addresses the above challenges through two key innovations: (i) relevance scoring, where we use LMs to estimate the importance of KG nodes relative to the given QA context, and (ii) joint reasoning, where we connect the QA context and KG to form a joint graph, and mutually update their representations through graph-based message passing. We evaluate QA-GNN on the CommonsenseQA and OpenBookQA datasets, and show its improvement over existing LM and LM+KG models, as well as its capability to perform interpretable and structured reasoning, e.g., correctly handling negation in questions. 

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2. GreaseLM: Graph REASoning Enhanced Language Models for Question Answering

   https://doi.org/10.48550/arXiv.2201.08860  

   Zhang, X; Bosselut, A; Yasunaga, M; Ren, H; Liang, P; Manning, C; Leskovec, J (January 2022, International Conference on Representation Learning (ICLR))

   Answering complex questions about textual narratives requires reasoning over both stated context and the world knowledge that underlies it. However, pretrained language models (LM), the foundation of most modern QA systems, do not robustly represent latent relationships between concepts, which is necessary for reasoning. While knowledge graphs (KG) are often used to augment LMs with structured representations of world knowledge, it remains an open question how to effectively fuse and reason over the KG representations and the language context, which provides situational constraints and nuances. In this work, we propose GreaseLM, a new model that fuses encoded representations from pretrained LMs and graph neural networks over multiple layers of modality interaction operations. Information from both modalities propagates to the other, allowing language context representations to be grounded by structured world knowledge, and allowing linguistic nuances (e.g., negation, hedging) in the context to inform the graph representations of knowledge. Our results on three benchmarks in the commonsense reasoning (i.e., CommonsenseQA, OpenbookQA) and medical question answering (i.e., MedQA-USMLE) domains demonstrate that GreaseLM can more reliably answer questions that require reasoning over both situational constraints and structured knowledge, even outperforming models 8x larger. 

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3. Deep Bidirectional Language-Knowledge Graph Pretraining

   Yasunaga, Michihiro; Bosselut, Antoine; Ren, Hongyu; Zhang, Xikun; Manning, Christopher D.; Liang, Percy; Leskovec, Jure (January 2022, Advances in neural information processing systems)

   Pretraining a language model (LM) on text has been shown to help various downstream NLP tasks. Recent works show that a knowledge graph (KG) can complement text data, offering structured background knowledge that provides a useful scaffold for reasoning. However, these works are not pretrained to learn a deep fusion of the two modalities at scale, limiting the potential to acquire fully joint representations of text and KG. Here we propose DRAGON (Deep Bidirectional Language-Knowledge Graph Pretraining), a self-supervised approach to pretraining a deeply joint language-knowledge foundation model from text and KG at scale. Specifically, our model takes pairs of text segments and relevant KG subgraphs as input and bidirectionally fuses information from both modalities. We pretrain this model by unifying two self-supervised reasoning tasks, masked language modeling and KG link prediction. DRAGON outperforms existing LM and LM+KG models on diverse downstream tasks including question answering across general and biomedical domains, with +5% absolute gain on average. In particular, DRAGON achieves notable performance on complex reasoning about language and knowledge (+10% on questions involving long contexts or multi-step reasoning) and low-resource QA (+8% on OBQA and RiddleSense), and new state-of-the-art results on various BioNLP tasks. Our code and trained models are available at https://github.com/michiyasunaga/dragon. 

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4. Language Agents Mirror Human Causal Reasoning Biases. How Can We Help Them Think Like Scientists?

   GX-Chen, Anthony; Lin, Dongyan; Samiei, Mandana; Precup, Doina; Richards, Blake Aaron; Fergus, Rob; Marino, Kenneth (October 2025, Conference on Language Modeling 2025)

   Language model (LM) agents are increasingly used as autonomous decision-makers which need to actively gather information to guide their decisions. A crucial cognitive skill for such agents is the efficient exploration and understanding of the causal structure of the world—key to robust, scientifically grounded reasoning. Yet, it remains unclear whether LMs possess this capability or exhibit systematic biases leading to erroneous conclusions. In this work, we examine LMs’ ability to explore and infer causal relationships, using the well-established Blicket Test paradigm from developmental psychology. We find that LMs reliably infer the common, intuitive disjunctive causal relationships but systematically struggle with the unusual, yet equally (or sometimes even more) evidenced conjunctive ones. This “disjunctive bias” persists across model families, sizes, and prompting strategies, and performance further declines as task complexity increases. Interestingly, an analogous bias appears in human adults, suggesting that LMs may have inherited deep-seated reasoning heuristics from their training data. To this end, we quantify similarities between LMs and humans, finding that LMs exhibit adult-like inference profiles (but not child-like). Finally, we propose a test-time sampling method which explicitly samples and eliminates hypotheses about causal relationships from the LM. This scalable approach significantly reduces the disjunctive bias and moves LMs closer to the goal of scientific, causally rigorous reasoning. 

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5. Inspecting and Editing Knowledge Representations in Language Models

   Hernandez, Evan; Li, Belinda; Andreas, Jacob (October 2024, Conference on Language Models)

   Neural language models (LMs) represent facts about the world described by text. Sometimes these facts derive from training data (in most LMs, a representation of the word banana encodes the fact that bananas are fruits). Sometimes facts derive from input text itself (a representation of the sentence I poured out the bottle encodes the fact that the bottle became empty). We describe REMEDI, a method for learning to map statements in natural language to fact encodings in an LM’s internal representation system. REMEDI encodings can be used as knowledge editors: when added to LM hidden representations, they modify downstream generation to be consistent with new facts. REMEDI encodings may also be used as probes: when compared to LM representations, they reveal which properties LMs already attribute to mentioned entities, in some cases making it possible to predict when LMs will generate outputs that conflict with background knowledge or input text. REMEDI thus links work on probing, prompting, and LM editing, and offers steps toward general tools for fine-grained inspection and control of knowledge in LMs. 

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