More Like this

1. Museomics Dissects the Genetic Basis for Adaptive Seasonal Coloration in the Least Weasel

   https://doi.org/10.1093/molbev/msab177  

   Miranda, Inês ; Giska, Iwona ; Farelo, Liliana ; Pimenta, João ; Zimova, Marketa ; Bryk, Jarosław ; Dalén, Love ; Mills, L Scott ; Zub, Karol ; Melo-Ferreira, José ( June 2021 , Molecular Biology and Evolution)

   Teeling, Emma (Ed.)

   Abstract Dissecting the link between genetic variation and adaptive phenotypes provides outstanding opportunities to understand fundamental evolutionary processes. Here, we use a museomics approach to investigate the genetic basis and evolution of winter coat coloration morphs in least weasels (Mustela nivalis), a repeated adaptation for camouflage in mammals with seasonal pelage color moults across regions with varying winter snow. Whole-genome sequence data were obtained from biological collections and mapped onto a newly assembled reference genome for the species. Sampling represented two replicate transition zones between nivalis and vulgaris coloration morphs in Europe, which typically develop white or brown winter coats, respectively. Population analyses showed that the morph distribution across transition zones is not a by-product of historical structure. Association scans linked a 200-kb genomic region to coloration morph, which was validated by genotyping museum specimens from intermorph experimental crosses. Genotyping the wild populations narrowed down the association to pigmentation gene MC1R and pinpointed a candidate amino acid change cosegregating with coloration morph. This polymorphism replaces an ancestral leucine residue by lysine at the start of the first extracellular loop of the protein in the vulgaris morph. A selective sweep signature overlapped the association region in vulgaris, suggesting that past adaptation favored winter-brown morphs and can anchor future adaptive responses to decreasing winter snow. Using biological collections as valuable resources to study natural adaptations, our study showed a new evolutionary route generating winter color variation in mammals and that seasonal camouflage can be modulated by changes at single key genes. 

   more » « less
2. Urban colonization through multiple genetic lenses: The city‐fox phenomenon revisited

   https://doi.org/10.1002/ece3.4898  

   DeCandia, Alexandra L. ; Brzeski, Kristin E. ; Heppenheimer, Elizabeth ; Caro, Catherine V. ; Camenisch, Glauco ; Wandeler, Peter ; Driscoll, Carlos ; vonHoldt, Bridgett M. ( January 2019 , Ecology and Evolution)

   Urbanization is driving environmental change on a global scale, creating novel environments for wildlife to colonize. Through a combination of stochastic and selective processes, urbanization is also driving evolutionary change. For instance, difficulty in traversing human‐modified landscapes may isolate newly established populations from rural sources, while novel selective pressures, such as altered disease risk, toxicant exposure, and light pollution, may further diverge populations through local adaptation. Assessing the evolutionary consequences of urban colonization and the processes underlying them is a principle aim of urban evolutionary ecology. In the present study, we revisited the genetic effects of urbanization on red foxes (Vulpes vulpes) that colonized Zurich, Switzerland. Through use of genome‐wide single nucleotide polymorphisms and microsatellite markers linked to the major histocompatibility complex (MHC), we expanded upon a previous neutral microsatellite study to assess population structure, characterize patterns of genetic diversity, and detect outliers associated with urbanization. Our results indicated the presence of one large evolutionary cluster, with substructure evident between geographic sampling areas. In urban foxes, we observed patterns of neutral and functional diversity consistent with founder events and reported increased differentiation between populations separated by natural and anthropogenic barriers. We additionally reported evidence of selection acting on MHC‐linked markers and identified outlier loci with putative gene functions related to energy metabolism, behavior, and immunity. We concluded that demographic processes primarily drove patterns of diversity, with outlier tests providing preliminary evidence of possible urban adaptation. This study contributes to our overall understanding of urban colonization ecology and emphasizes the value of combining datasets when examining evolutionary change in an increasingly urban world.

    

   more » « less
3. Avian Coloration Genetics: Recent Advances and Emerging Questions

   https://doi.org/10.1093/jhered/esab015  

   Price-Waldman, Rosalyn ; Stoddard, Mary Caswell ( May 2021 , Journal of Heredity)

   vonHoldt, Bridgett (Ed.)

   Abstract The colorful phenotypes of birds have long provided rich source material for evolutionary biologists. Avian plumage, beaks, skin, and eggs—which exhibit a stunning range of cryptic and conspicuous forms—inspired early work on adaptive coloration. More recently, avian color has fueled discoveries on the physiological, developmental, and—increasingly—genetic mechanisms responsible for phenotypic variation. The relative ease with which avian color traits can be quantified has made birds an attractive system for uncovering links between phenotype and genotype. Accordingly, the field of avian coloration genetics is burgeoning. In this review, we highlight recent advances and emerging questions associated with the genetic underpinnings of bird color. We start by describing breakthroughs related to 2 pigment classes: carotenoids that produce red, yellow, and orange in most birds and psittacofulvins that produce similar colors in parrots. We then discuss structural colors, which are produced by the interaction of light with nanoscale materials and greatly extend the plumage palette. Structural color genetics remain understudied—but this paradigm is changing. We next explore how colors that arise from interactions among pigmentary and structural mechanisms may be controlled by genes that are co-expressed or co-regulated. We also identify opportunities to investigate genes mediating within-feather micropatterning and the coloration of bare parts and eggs. We conclude by spotlighting 2 research areas—mechanistic links between color vision and color production, and speciation—that have been invigorated by genetic insights, a trend likely to continue as new genomic approaches are applied to non-model species. 

   more » « less
4. Consistent female preference for rare and unfamiliar male color patterns in wild guppy populations

   https://doi.org/10.1093/beheco/arz134  

   Valvo, Jennifer J. ; Rodd, F. Helen ; Hughes, Kimberly A. ; Herberstein, ed., Marie ( August 2019 , Behavioral Ecology)

   How genetic variation is maintained in ecologically important traits is a central question in evolutionary biology. Male Trinidadian guppies, Poecilia reticulata, exhibit high genetic diversity in color patterns within populations, and field and laboratory studies implicate negative frequency-dependent selection in maintaining this variation. However, behavioral and ecological processes that mediate this selection in natural populations are poorly understood. We evaluated female mate preference in 11 natural guppy populations, including paired populations from high- and low-predation habitats, to determine if this behavior is responsible for negative frequency-dependent selection and to evaluate its prevalence in nature. Females directed significantly more attention to males with rare and unfamiliar color patterns than to males with common patterns. Female attention also increased with the area of male orange coloration, but this preference was independent of the preference for rare and unfamiliar patterns. We also found an overall effect of predation regime; females from high-predation populations directed more attention toward males than those from low-predation populations. Again, however, the habitat-linked preference was statistically independent from the preference for rare and unfamiliar patterns. Because previous research indicates that female attention to males predicts male mating success, we conclude that the prevalence of female preference for males with rare and unfamiliar color patterns across many natural populations supports the hypothesis that female preference is an important process underlying the maintenance of high genetic variation in guppy color patterns.

    

   more » « less
5. Morph-specific differences in escape behavior in a color polymorphic lizard

   https://doi.org/10.1007/s00265-022-03211-8  

   Brock, Kinsey M. ; Madden, Indiana E. ( July 2022 , Behavioral Ecology and Sociobiology)

   Variation in color morph behavior is an important factor in the maintenance of color polymorphism. Alternative anti-predator behaviors are often associated with morphological traits such as coloration, possibly because predator-mediated viability selection favors certain combinations of anti-predator behavior and color. The Aegean wall lizard,Podarcis erhardii, is color polymorphic and populations can have up to three monochromatic morphs: orange, yellow, and white. We investigated whether escape behaviors differ among coexisting color morphs, and if morph behaviors are repeatable across different populations with the same predator species. Specifically, we assessed color morph flight initiation distance (FID), distance to the nearest refuge (DNR), and distance to chosen refuge (DR) in two populations of Aegean wall lizards from Naxos island. We also analyzed the type of refugia color morphs selected and their re-emergence behavior following a standardized approach. We found that orange morphs have different escape behaviors from white and yellow morphs, and these differences are consistent in both populations we sampled. Orange morphs have shorter FIDs, DNRs, and DRs; select different refuge types; and re-emerge less often after being approached compared to white and yellow morphs. Observed differences in color morph escape behaviors support the idea that morphs have evolved alternative behavioral strategies that may play a role in population-level morph maintenance and loss.

   Color polymorphic species often differ in behaviors related to reproduction, but differences in other behaviors are relatively underexplored. In this study, we use an experimental approach in two natural populations of color populations of color polymorphic lizards to determine that color morphs have diverged in their escape behaviors. By conducting our experiments in two different populations with similar predator regimes, we show for the first time that behavioral differences among intra-specific color morphs are repeatable across populations, suggesting that alternative behavioral strategies have evolved in this species. Using this experimental approach, we demonstrate that the brightest orange morph stays closer to refuge than other morphs, uses a different refuge type (vegetation) more often than other morphs (wall crevices), and take much longer to emerge from refuge after a simulated predation event than other morphs. Thus, selective pressures from visual predators may differ between morphs and play a role in the evolution and maintenance of color polymorphisms in these types of systems. Our study species,Podarcis erhardii, belongs to a highly color polymorphic genus (19/23 spp. are color polymorphic) that contains the same three color morphs, thus we believe our results may be relevant to more than justP.erhardii.

    

   more » « less