Abstract Widespread changes in arctic and boreal Normalized Difference Vegetation Index (NDVI) values captured by satellite platforms indicate that northern ecosystems are experiencing rapid ecological change in response to climate warming. Increasing temperatures and altered hydrology are driving shifts in ecosystem biophysical properties that, observed by satellites, manifest as long‐term changes in regionalNDVI. In an effort to examine the underlying ecological drivers of these changes, we used field‐scale remote sensing ofNDVIto track peatland vegetation in experiments that manipulated hydrology, temperature, and carbon dioxide (CO2) levels. In addition toNDVI, we measured percent cover by species and leaf area index (LAI). We monitored two peatland types broadly representative of the boreal region. One site was a rich fen located near Fairbanks, Alaska, at the Alaska Peatland Experiment (APEX), and the second site was a nutrient‐poor bog located in Northern Minnesota within the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experiment. We found thatNDVIdecreased with long‐term reductions in soil moisture at theAPEXsite, coincident with a decrease in photosynthetic leaf area and the relative abundance of sedges. We observed increasingNDVIwith elevated temperature at theSPRUCEsite, associated with an increase in the relative abundance of shrubs and a decrease in forb cover. Warming treatments at theSPRUCEsite also led to increases in theLAIof the shrub layer. We found no strong effects of elevatedCO2on community composition. Our findings support recent studies suggesting that changes inNDVIobserved from satellite platforms may be the result of changes in community composition and ecosystem structure in response to climate warming. 
                        more » 
                        « less   
                    
                            
                            Lab‐based multispectral photography for approximating chlorophyll content in Zostera marina
                        
                    
    
            Abstract Reduced light is one of the primary threats to seagrass meadows in the coming decades, with reduced light reaching the benthos due to eutrophication. We assessed a multispectral photography technique using near‐infrared photography to estimate chlorophyll content in the seagrassZostera marina. Using near‐infrared and red wavelength cameras in the lab environment, we measured normalized difference vegetation index (NDVI) in photographs of sampled seagrass leaves. In samples taken from three different environments, we found a positive correlation between lab‐based NDVI and chlorophyll content, with variation attributable to leaf age. In samples grown under different light conditions, we found high levels of NDVI associated with lower light possibly due to seagrass photoacclimation. This method may be used in addition to existing seagrass monitoring methods to collect data on seagrass photic status and estimate chlorophyll content, and detect possible light limitation due to turbidity or high epibiota cover. The relatively low cost and time required for this method may make it useful where researchers are already collecting and imaging seagrass as part of routine monitoring. 
        more » 
        « less   
        
    
    
                            - PAR ID:
- 10485346
- Publisher / Repository:
- Wiley Blackwell (John Wiley & Sons)
- Date Published:
- Journal Name:
- Limnology and Oceanography: Methods
- Volume:
- 22
- Issue:
- 1
- ISSN:
- 1541-5856
- Format(s):
- Medium: X Size: p. 25-33
- Size(s):
- p. 25-33
- Sponsoring Org:
- National Science Foundation
More Like this
- 
            
- 
            ABSTRACT Studying declining and rare species is inherently challenging, particularly when the cause of rarity is emerging infectious diseases (EIDs). Tracking changes in the distribution of pathogens that cause EIDs, and the species made scarce by them, is necessary for conservation efforts, but it is often a time and resource intensive task. Here, we demonstrate how using environmental DNA (eDNA) to detect rare species—and the pathogens that threaten them—can be a powerful tool to understand disease dynamics and develop effective conservation strategies. Amphibian populations around the world have undergone rapid declines and extinctions due to the emerging fungal pathogen,Batrachochytrium dendrobatidis(Bd). We developed and validated a qPCR assay using eDNA sampling methods for some of the most imperiled amphibian species, harlequin frogs (Atelopus varius,Atelopus zeteki,andAtelopus chiriquiensis), and applied this assay in concert with a standard qPCR assay forBdin rainforest streams of Panamá. We confirmed the presence ofAtelopusat sampling locations across three regions. In addition, we used genomic analysis of eDNA samples to show thatBdin Panamá falls within the Global Panzootic Lineage, a lineage associated with disease‐induced declines. We detectedBdDNA in most of our historic sites, and its concentration in water samples correlated with stream characteristics and the pathogen load of the local amphibian community. These results suggest that some populations ofAtelopuspersist in their historic localities. They also show how eDNA analysis can be effectively used for monitoring species presence, pathogen concentrations, and the distribution and spread of pathogen lineages. EIDs are a growing threat to endangered species around the world. Simultaneous detection of rare and declining host species and their pathogens with eDNA will help to provide key insights for effective conservation management.more » « less
- 
            ABSTRACT The Indo‐Pacific lionfish,Pterois volitans,is an invasive species in the western Atlantic. Since its introduction to Florida in the early 1980s, populations have surged with lionfish now found from North Carolina to Venezuela. As their range expands, these generalist predators threaten native fauna, and while they are primarily a marine species, their tolerance for low salinity conditions may allow them to expand into sensitive estuarine habitats undetected. Traditional approaches for tracking invasive species such as direct observation or trapping are impractical over large spatial scales, making environmental DNA (eDNA) an attractive alternative. Molecular assays, such as those employing quantitative polymerase chain reaction (qPCR), amplify low copy number DNA fragments in environmental samples and are increasingly employed as a complement to traditional methods for the detection of invasive species. Currently, there is one published PCR assay for the detection of lionfish eDNA. However, the specificity of this assay is unverified, and the critical performance parameters limit of detection (LOD) and limit of quantification (LOQ) have not been established. Here we evaluate the efficacy of this assay and show that it is likely to result in false negatives in the western Atlantic. As an alternative, we developed a new TaqMan probe‐based qPCR assay that is species‐specific forP. volitansand highly sensitive with a LOD of 12 copies per reaction and a LOQ of 598 copies per reaction. While our assay does not amplify the closely relatedP. miles, which was also introduced in the western Atlantic, the low prevalence of this species in the invasive population means our assay is effective for most monitoring purposes. We conclude that our assay is a robust method for the detection of lionfish and can be employed in any habitat, offering new opportunities for controlling the spread of invasive lionfish.more » « less
- 
            Chlorophyll fluorescence is a well-established method to estimate chlorophyll content in leaves. A popular fluorescence-based meter, the Opti-Sciences CCM-300 Chlorophyll Content Meter (CCM-300), utilizes the fluorescence ratio F735/F700 and equations derived from experiments using broadleaf species to provide a direct, rapid estimate of chlorophyll content used for many applications. We sought to quantify the performance of the CCM-300 relative to more intensive methods, both across plant functional types and years of use. We linked CCM-300 measurements of broadleaf, conifer, and graminoid samples in 2018 and 2019 to high-performance liquid chromatography (HPLC) and/or spectrophotometric (Spec) analysis of the same leaves. We observed a significant difference between the CCM-300 and HPLC/Spec, but not between HPLC and Spec. In comparison to HPLC, the CCM-300 performed better for broadleaves (r = 0.55, RMSE = 154.76) than conifers (r = 0.52, RMSE = 171.16) and graminoids (r = 0.32, RMSE = 127.12). We observed a slight deterioration in meter performance between years, potentially due to meter calibration. Our results show that the CCM-300 is reliable to demonstrate coarse variations in chlorophyll but may be limited for cross-plant functional type studies and comparisons across years.more » « less
- 
            Dimethylsulfoniopropionate (DMSP) is produced by many species of marine phytoplankton and has been reported to provide a variety of beneficial functions including osmoregulation. Dinoflagellates are recognized as majorDMSPproducers; however, accumulation has been shown to be highly variable in this group. We explored the effect of hyposaline transfer inGambierdiscus belizeanusbetween ecologically relevant salinities (36 and 31) onDMSPaccumulation, Chla, cell growth, and cell volume, over 12 d. Our results showed thatG. belizeanusmaintained an intracellularDMSPcontent of 16.3 pmol cell−1and concentration of 139 mMin both salinities. Although this intracellular concentration was near the median reported for other dinoflagellates, the cellular content achieved byG. belizeanuswas the highest reported of any dinoflagellate thus far, owing mainly to its large size.DMSPlevels were not significantly affected by salinity treatment but did change over time during the experiment. Salinity, however, did have a significant effect on the ratio ofDMSP:Chla, suggesting that salinity transfer ofG. belizeanusinduced a physiological response other thanDMSPadjustment. A survey ofDMSPcontent in a variety ofGambierdiscusspecies and strains revealed relatively highDMSPconcentrations (1.0–16.4 pmol cell−1) as well as high intrageneric and intraspecific variation. We conclude that, althoughDMSPmay not be involved in long‐term (3–12 d) osmoregulation in this species,G. belizeanusand otherGambierdiscusspecies may be important contributors toDMSPproduction in tropical benthic microalgal communities due to their large size and high cellular content.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
