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1. Firefly: A Browser-based Interactive 3D Data Visualization Tool for Millions of Data Points

   https://doi.org/10.3847/1538-4365/acb59f  

   Gurvich, Alexander B. ; Geller, Aaron M. ( March 2023 , The Astrophysical Journal Supplement Series)

   We present Firefly, a new browser-based interactive tool for visualizing 3D particle data sets. On a typical personal computer, Firefly can simultaneously render and enable real-time interactions with ≳10 million particles, and can interactively explore data sets with billions of particles using the included custom-built octree render engine. Once created, viewing a Firefly visualization requires no installation and is immediately usable in most modern internet browsers simply by visiting a URL. As a result, a Firefly visualization works out-of-the-box on most devices including smartphones and tablets. Firefly is primarily developed for researchers to explore their own data, but can also be useful to communicate results to researchers and/or collaborators and as an effective public outreach tool. Every element of the user interface can be customized and disabled, enabling easy adaptation of the same visualization for different audiences with little additional effort. Creating a new Firefly visualization is simple with the provided Python data preprocessor that translates input data to a Firefly-compatible format and provides helpful methods for hosting instances of Firefly both locally and on the internet. In addition to visualizing the positions of particles, users can visualize vector fields (e.g., velocities) and also filter and color points by scalar fields. We share three examples of Firefly applied to astronomical data sets: (1) the FIRE cosmological zoom-in simulations, (2) the SDSS galaxy catalog, and (3) Gaia Data Release 3. A gallery of additional interactive demos is available atalexbgurvi.ch/Firefly.

    

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2. Firefly Neural Architecture Descent: a General Approach for Growing Neural Networks

   Wu, Lemeng ; Liu, Bo ; Stone, Peter ; Liu, Qiang ( January 2020 , Conference on Neural Information Processing Systems (NeurIPS))

   We propose firefly neural architecture descent, a general framework for progressively and dynamically growing neural networks to jointly optimize the networks' parameters and architectures. Our method works in a steepest descent fashion, which iteratively finds the best network within a functional neighborhood of the original network that includes a diverse set of candidate network structures. By using Taylor approximation, the optimal network structure in the neighborhood can be found with a greedy selection procedure. We show that firefly descent can flexibly grow networks both wider and deeper, and can be applied to learn accurate but resource-efficient neural architectures that avoid catastrophic forgetting in continual learning. Empirically, firefly descent achieves promising results on both neural architecture search and continual learning. In particular, on a challenging continual image classification task, it learns networks that are smaller in size but have higher average accuracy than those learned by the state-of-the-art methods. 

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3. First Phylogeny of Pseudolychnuris Reveals Its Polyphyly and a Staggering Case of Convergence at the Andean Paramos (Lampyridae: Lampyrini)

   https://doi.org/10.3390/insects13080697  

   Gisseth Ladino Peñuela, Angie ; Botero, Juan Pablo ; Lima da Silveira, Luiz Felipe ( August 2022 , Insects)

   South America is likely the cradle of several New World firefly lineages but remains largely understudied. Despite several advances in firefly systematics in the Neotropical region, the Andean region has been largely unstudied for over a century. The Colombian Páramos are a critically threatened biodiversity hotspot that houses several endemic species, including the firefly genus Pseudolychnuris, with two species—P. vittata and P. suturalis. Here, by analyzing the phylogenetic relationships of Pseudolychnuris, we found that this genus is polyphyletic. Pseudolychnuris vittata and P. suturalis were found to be distantly related despite the striking similarity in outline and color pattern of males and females. We redescribe Pseudolychnuris and its type species P. vittata. Moreover, we revalidate Alychnus Kirsch, 1865 stat. rev. to accommodate A. suturaliscomb. nov., also redescribed here. We provide updated distribution maps and report field observations for both monotypic genera. Since adults visit flowers and interact with pollen and nectar, Pseudolychnuris and Alychnus may be occasional pollinators of Andean-endemic plants, a phenomenon previously neglected. Our findings reveal an interesting case of convergence between Pseudolychnuris and Alychnus—probably associated with life in the Páramos—and shed light on character evolution in the Photinini lineage of fireflies.

    

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4. Morphological changes in the tracheal system associated with light organs of the firefly Photinus pyralis (Coleoptera: Lampyridae) across life stages

   https://doi.org/10.1371/journal.pone.0268112  

   Dunn, Kristin N. ; Davis, Steven R. ; Herhold, Hollister W. ; Stanger-Hall, Kathrin F. ; Bybee, Seth M. ; Branham, Marc A. ( June 2022 , PLOS ONE)

   ZHANG, Feng (Ed.)

   Oxygen is an important and often limiting reagent of a firefly’s bioluminescent chemical reaction. Therefore, the development of the tracheal system and its subsequent modification to support the function of firefly light organs are key to understanding this process. We employ micro-CT scanning, 3D rendering, and confocal microscopy to assess the abdominal tracheal system in Photinus pyralis from the external spiracles to the light organ’s internal tracheal brush, a feature named here for the first time. The abdominal spiracles in firefly larvae and pupae are of the biforous type, with a filter apparatus and appear to have an occlusor muscle to restrict airflow. The first abdominal spiracle in the adult firefly is enlarged and bears an occlusor muscle, and abdominal spiracles two through eight are small, with a small atrium and bilobed closing apparatus. Internal tracheal system features, including various branches, trunks, and viscerals, were homologized across life stages. In adults, the sexually dimorphic elaboration and increase in volume associated with tracheal features of luminous segments emphasizes the importance of gas exchange during the bioluminescent process. 

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5. Morphological changes in the tracheal system associated with light organs of the firefly Photinus pyralis (Coleoptera: Lampyridae) across life stages

   Dunn, Kristin N ; Davis, Steven R ; Herhold, Hollister W ; Stanger-Hall, Kathrin F ; Bybee, Seth M ; Branham, Marc A ( January 2022 , PloS one)

   Oxygen is an important and often limiting reagent of a firefly’s bioluminescent chemical reaction. Therefore, the development of the tracheal system and its subsequent modification to support the function of firefly light organs are key to understanding this process. We employ micro-CT scanning, 3D rendering, and confocal microscopy to assess the abdominal tracheal system in Photinus pyralis from the external spiracles to the light organ’s internal tracheal brush, a feature named here for the first time. The abdominal spiracles in firefly larvae and pupae are of the biforous type, with a filter apparatus and appear to have an occlusor muscle to restrict airflow. The first abdominal spiracle in the adult firefly is enlarged and bears an occlusor muscle, and abdominal spiracles two through eight are small, with a small atrium and bilobed closing apparatus. Internal tracheal system features, including various branches, trunks, and viscerals, were homologized across life stages. In adults, the sexually dimorphic elaboration and increase in volume associated with tracheal features of luminous segments emphasizes the importance of gas exchange during the bioluminescent process. 

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