More Like this

1. Exploring an Affective and Responsive Virtual Environment to Improve Remote Learning

   https://doi.org/10.3390/virtualworlds2010004  

   Qi, Jianing; Tang, Hao; Zhu, Zhigang (March 2023, Virtual Worlds)

   Online classes are typically conducted by using video conferencing software such as Zoom, Microsoft Teams, and Google Meet. Research has identified drawbacks of online learning, such as “Zoom fatigue”, characterized by distractions and lack of engagement. This study presents the CUNY Affective and Responsive Virtual Environment (CARVE) Hub, a novel virtual reality hub that uses a facial emotion classification model to generate emojis for affective and informal responsive interaction in a 3D virtual classroom setting. A web-based machine learning model is employed for facial emotion classification, enabling students to communicate four basic emotions live through automated web camera capture in a virtual classroom without activating their cameras. The experiment is conducted in undergraduate classes on both Zoom and CARVE, and the results of a survey indicate that students have a positive perception of interactions in the proposed virtual classroom compared with Zoom. Correlations between automated emojis and interactions are also observed. This study discusses potential explanations for the improved interactions, including a decrease in pressure on students when they are not showing faces. In addition, video panels in traditional remote classrooms may be useful for communication but not for interaction. Students favor features in virtual reality, such as spatial audio and the ability to move around, with collaboration being identified as the most helpful feature. 

   more » « less
2. Counteracting Dark Web Text-Based CAPTCHA with Generative Adversarial Learning for Proactive Cyber Threat Intelligence

   https://doi.org/10.1145/3505226  

   Zhang, Ning; Ebrahimi, Mohammadreza; Li, Weifeng; Chen, Hsinchun (June 2022, ACM Transactions on Management Information Systems)

   Automated monitoring of dark web (DW) platforms on a large scale is the first step toward developing proactive Cyber Threat Intelligence (CTI). While there are efficient methods for collecting data from the surface web, large-scale dark web data collection is often hindered by anti-crawling measures. In particular, text-based CAPTCHA serves as the most prevalent and prohibiting type of these measures in the dark web. Text-based CAPTCHA identifies and blocks automated crawlers by forcing the user to enter a combination of hard-to-recognize alphanumeric characters. In the dark web, CAPTCHA images are meticulously designed with additional background noise and variable character length to prevent automated CAPTCHA breaking. Existing automated CAPTCHA breaking methods have difficulties in overcoming these dark web challenges. As such, solving dark web text-based CAPTCHA has been relying heavily on human involvement, which is labor-intensive and time-consuming. In this study, we propose a novel framework for automated breaking of dark web CAPTCHA to facilitate dark web data collection. This framework encompasses a novel generative method to recognize dark web text-based CAPTCHA with noisy background and variable character length. To eliminate the need for human involvement, the proposed framework utilizes Generative Adversarial Network (GAN) to counteract dark web background noise and leverages an enhanced character segmentation algorithm to handle CAPTCHA images with variable character length. Our proposed framework, DW-GAN, was systematically evaluated on multiple dark web CAPTCHA testbeds. DW-GAN significantly outperformed the state-of-the-art benchmark methods on all datasets, achieving over 94.4% success rate on a carefully collected real-world dark web dataset. We further conducted a case study on an emergent Dark Net Marketplace (DNM) to demonstrate that DW-GAN eliminated human involvement by automatically solving CAPTCHA challenges with no more than three attempts. Our research enables the CTI community to develop advanced, large-scale dark web monitoring. We make DW-GAN code available to the community as an open-source tool in GitHub. 

   more » « less
3. Design and Implementation of Phylotastic, a Service Architecture for Evolutionary Biology

   https://doi.org/10.1142/S0218194020500382  

   Tayeen, Abu Saleh; Nguyen, Thanh Hai; Nguyen, Van Duc; Pontelli, Enrico (October 2020, International Journal of Software Engineering and Knowledge Engineering)

   null (Ed.)

   Access and reuse of authoritative phylogenetic knowledge have been a longstanding challenges in the evolutionary biology community — leading to a number of research efforts (e.g. focused on interoperation, standardization of formats, and development of minimum reporting requirements). The Phylotastic project was launched to provide an answer to such challenges — as an architectural concept collaboratively designed by evolutionary biologists and computer scientists. This paper describes the first comprehensive implementation of the Phylotastic architecture, based on an open platform for Web services composition. The implementation provides a portal, which composes Web services along a fixed collection of workflows, as well as an interface to allow users to develop novel workflows. The Web services composition is guided by automated planning algorithms and built on a Web services registry and an execution monitoring engine. The platform provides resilience through seamless automated recovery from failed services. 

   more » « less
4. An Interactive Online Electron Microscopy Platform Integrating Classroom Lectures and Lab Practice

   https://doi.org/10.1017/S1551929520000656  

   Freed, Noah; Butler, Devon; Cairns, Allison; Hugo, Rick; Jiao, Jun; Chen, Zhiqiang (March 2020, Microscopy Today)

   null (Ed.)

   The Online Electron Microscopy Platform makes electron microscopy education accessible by combining simulation-based practice with a range of educational content. Students learn how to operate electron microscopes by using virtual microscopes that precisely simulate the functions of real microscopes. Built as a web application, the platform can be used by an unlimited number of people and at any time. This platform reduces the time needed for training users to operate a real microscope. By preparing students in STEM disciplines to use electron microscopes, the system helps them acquire the skills they need to succeed in the modern workforce. 

   more » « less
5. Author-Driven Computable Data and Ontology Production for Taxonomists

   https://doi.org/10.3897/biss.5.75741  

   Cui, Hong; Ford, Bruce; Starr, Julian; Macklin, James; Reznicek, Anton; Giebink, Noah; Longert, Dylan; Léveillé-Bourret, Étienne; Zhang, Limin (September 2021, Biodiversity Information Science and Standards)

   It takes great effort to manually or semi-automatically convert free-text phenotype narratives (e.g., morphological descriptions in taxonomic works) to a computable format before they can be used in large-scale analyses. We argue that neither a manual curation approach nor an information extraction approach based on machine learning is a sustainable solution to produce computable phenotypic data that are FAIR (Findable, Accessible, Interoperable, Reusable) (Wilkinson et al. 2016). This is because these approaches do not scale to all biodiversity, and they do not stop the publication of free-text phenotypes that would need post-publication curation. In addition, both manual and machine learning approaches face great challenges: the problem of inter-curator variation (curators interpret/convert a phenotype differently from each other) in manual curation, and keywords to ontology concept translation in automated information extraction, make it difficult for either approach to produce data that are truly FAIR. Our empirical studies show that inter-curator variation in translating phenotype characters to Entity-Quality statements (Mabee et al. 2007) is as high as 40% even within a single project. With this level of variation, curated data integrated from multiple curation projects may still not be FAIR. The key causes of this variation have been identified as semantic vagueness in original phenotype descriptions and difficulties in using standardized vocabularies (ontologies). We argue that the authors describing characters are the key to the solution. Given the right tools and appropriate attribution, the authors should be in charge of developing a project's semantics and ontology. This will speed up ontology development and improve the semantic clarity of the descriptions from the moment of publication. In this presentation, we will introduce the Platform for Author-Driven Computable Data and Ontology Production for Taxonomists, which consists of three components: a web-based, ontology-aware software application called 'Character Recorder,' which features a spreadsheet as the data entry platform and provides authors with the flexibility of using their preferred terminology in recording characters for a set of specimens (this application also facilitates semantic clarity and consistency across species descriptions); a set of services that produce RDF graph data, collects terms added by authors, detects potential conflicts between terms, dispatches conflicts to the third component and updates the ontology with resolutions; and an Android mobile application, 'Conflict Resolver,' which displays ontological conflicts and accepts solutions proposed by multiple experts. a web-based, ontology-aware software application called 'Character Recorder,' which features a spreadsheet as the data entry platform and provides authors with the flexibility of using their preferred terminology in recording characters for a set of specimens (this application also facilitates semantic clarity and consistency across species descriptions); a set of services that produce RDF graph data, collects terms added by authors, detects potential conflicts between terms, dispatches conflicts to the third component and updates the ontology with resolutions; and an Android mobile application, 'Conflict Resolver,' which displays ontological conflicts and accepts solutions proposed by multiple experts. Fig. 1 shows the system diagram of the platform. The presentation will consist of: a report on the findings from a recent survey of 90+ participants on the need for a tool like Character Recorder; a methods section that describes how we provide semantics to an existing vocabulary of quantitative characters through a set of properties that explain where and how a measurement (e.g., length of perigynium beak) is taken. We also report on how a custom color palette of RGB values obtained from real specimens or high-quality specimen images, can be used to help authors choose standardized color descriptions for plant specimens; and a software demonstration, where we show how Character Recorder and Conflict Resolver can work together to construct both human-readable descriptions and RDF graphs using morphological data derived from species in the plant genus Carex (sedges). The key difference of this system from other ontology-aware systems is that authors can directly add needed terms to the ontology as they wish and can update their data according to ontology updates. a report on the findings from a recent survey of 90+ participants on the need for a tool like Character Recorder; a methods section that describes how we provide semantics to an existing vocabulary of quantitative characters through a set of properties that explain where and how a measurement (e.g., length of perigynium beak) is taken. We also report on how a custom color palette of RGB values obtained from real specimens or high-quality specimen images, can be used to help authors choose standardized color descriptions for plant specimens; and a software demonstration, where we show how Character Recorder and Conflict Resolver can work together to construct both human-readable descriptions and RDF graphs using morphological data derived from species in the plant genus Carex (sedges). The key difference of this system from other ontology-aware systems is that authors can directly add needed terms to the ontology as they wish and can update their data according to ontology updates. The software modules currently incorporated in Character Recorder and Conflict Resolver have undergone formal usability studies. We are actively recruiting Carex experts to participate in a 3-day usability study of the entire system of the Platform for Author-Driven Computable Data and Ontology Production for Taxonomists. Participants will use the platform to record 100 characters about one Carex species. In addition to usability data, we will collect the terms that participants submit to the underlying ontology and the data related to conflict resolution. Such data allow us to examine the types and the quantities of logical conflicts that may result from the terms added by the users and to use Discrete Event Simulation models to understand if and how term additions and conflict resolutions converge. We look forward to a discussion on how the tools (Character Recorder is online at http://shark.sbs.arizona.edu/chrecorder/public) described in our presentation can contribute to producing and publishing FAIR data in taxonomic studies. 

   more » « less