skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


Title: A Numerical Study of a Stabilized Hyperbolic Equation Inspired by Models for Bio-Polymerization
Abstract This report investigates a stabilization method for first order hyperbolic differential equations applied to DNA transcription modeling. It is known that the usual unstabilized finite element method contains spurious oscillations for nonsmooth solutions. To stabilize the finite element method the authors consider adding to the first order hyperbolic differential system a stabilization term in space and time filtering. Numerical analysis of the stabilized finite element algorithms and computations describing a few biological settings are studied herein.  more » « less
Award ID(s):
1951510
PAR ID:
10521158
Author(s) / Creator(s):
; ; ; ;
Publisher / Repository:
De Gruyter
Date Published:
Journal Name:
Computational Methods in Applied Mathematics
Volume:
0
Issue:
0
ISSN:
1609-4840
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; (, Computational Methods in Applied Mathematics)
    Abstract The paper introduces a finite element method for an Eulerian formulation of partial differential equations governing the transport and diffusion of a scalar quantity in a time-dependent domain. The method follows the idea from[C. Lehrenfeld and M. Olshanskii,An Eulerian finite element method for PDEs in time-dependent domains,ESAIM Math. Model. Numer. Anal. 53 2019, 2, 585–614]of a solution extension to realise the Eulerian time-stepping scheme. However, a reformulation of the partial differential equation is suggested to derive a scheme which conserves the quantity under consideration exactly on the discrete level. For the spatial discretisation, the paper considers an unfitted finite element method. Ghost-penalty stabilisation is used to realise the discrete solution extension and gives a scheme robust against arbitrary intersections between the mesh and geometry interface. The stability is analysed for both first- and second-order backward differentiation formula versions of the scheme. Several numerical examples in two and three spatial dimensions are included to illustrate the potential of this method. 
    more » « less
  2. ; ; (, Fluids)
    The solution of compressible flow equations is of interest with many aerospace engineering applications. Past literature has focused primarily on the solution of Computational Fluid Dynamics (CFD) problems with low-order finite element and finite volume methods. High-order methods are more the norm nowadays, in both a finite element and a finite volume setting. In this paper, inviscid compressible flow of an ideal gas is solved with high-order spectral/hp stabilized formulations using uniform high-order spectral element methods. The Euler equations are solved with high-order spectral element methods. Traditional definitions of stabilization parameters used in conjunction with traditional low-order bilinear Lagrange-based polynomials provide diffused results when applied to the high-order context. Thus, a revision of the definitions of the stabilization parameters was needed in a high-order spectral/hp framework. We introduce revised stabilization parameters, τsupg, with low-order finite element solutions. We also reexamine two standard definitions of the shock-capturing parameter, δ: the first is described with entropy variables, and the other is the YZβ parameter. We focus on applications with the above introduced stabilization parameters and analyze an array of problems in the high-speed flow regime. We demonstrate spectral convergence for the Kovasznay flow problem in both L1 and L2 norms. We numerically validate the revised definitions of the stabilization parameter with Sod’s shock and the oblique shock problems and compare the solutions with the exact solutions available in the literature. The high-order formulation is further extended to solve shock reflection and two-dimensional explosion problems. Following, we solve flow past a two-dimensional step at a Mach number of 3.0 and numerically validate the shock standoff distance with results obtained from NASA Overflow 2.2 code. Compressible flow computations with high-order spectral methods are found to perform satisfactorily for this supersonic inflow problem configuration. We extend the formulation to solve the implosion problem. Furthermore, we test the stabilization parameters on a complex flow configuration of AS-202 capsule analyzing the flight envelope. The proposed stabilization parameters have shown robustness, providing excellent results for both simple and complex geometries. 
    more » « less
  3. ; ; ; ; (, International Journal for Numerical Methods in Engineering)
    Summary In this paper, we propose and analyze two stabilized mixed finite element methods for the dual‐porosity‐Stokes model, which couples the free flow region and microfracture‐matrix system through four interface conditions on an interface. The first stabilized mixed finite element method is a coupled method in the traditional format. Based on the idea of partitioned time stepping, the four interface conditions, and the mass exchange terms in the dual‐porosity model, the second stabilized mixed finite element method is decoupled in two levels and allows a noniterative splitting of the coupled problem into three subproblems. Due to their superior conservation properties and convenience of the computation of flux, mixed finite element methods have been widely developed for different types of subsurface flow problems in porous media. For the mixed finite element methods developed in this article, no Lagrange multiplier is used, but an interface stabilization term with a penalty parameter is added in the temporal discretization. This stabilization term ensures the numerical stability of both the coupled and decoupled schemes. The stability and the convergence analysis are carried out for both the coupled and decoupled schemes. Three numerical experiments are provided to demonstrate the accuracy, efficiency, and applicability of the proposed methods. 
    more » « less
  4. ; ; ; (, Communications on Applied Mathematics and Computation)
    Abstract Fixed-point fast sweeping WENO methods are a class of efficient high-order numerical methods to solve steady-state solutions of hyperbolic partial differential equations (PDEs). The Gauss-Seidel iterations and alternating sweeping strategy are used to cover characteristics of hyperbolic PDEs in each sweeping order to achieve fast convergence rate to steady-state solutions. A nice property of fixed-point fast sweeping WENO methods which distinguishes them from other fast sweeping methods is that they are explicit and do not require inverse operation of nonlinear local systems. Hence, they are easy to be applied to a general hyperbolic system. To deal with the difficulties associated with numerical boundary treatment when high-order finite difference methods on a Cartesian mesh are used to solve hyperbolic PDEs on complex domains, inverse Lax-Wendroff (ILW) procedures were developed as a very effective approach in the literature. In this paper, we combine a fifth-order fixed-point fast sweeping WENO method with an ILW procedure to solve steady-state solution of hyperbolic conservation laws on complex computing regions. Numerical experiments are performed to test the method in solving various problems including the cases with the physical boundary not aligned with the grids. Numerical results show high-order accuracy and good performance of the method. Furthermore, the method is compared with the popular third-order total variation diminishing Runge-Kutta (TVD-RK3) time-marching method for steady-state computations. Numerical examples show that for most of examples, the fixed-point fast sweeping method saves more than half CPU time costs than TVD-RK3 to converge to steady-state solutions. 
    more » « less
  5. ; ; (, Numerical Methods for Partial Differential Equations)
    Abstract We consider the finite element approximation of a coupled fluid‐structure interaction (FSI) system, which comprises a three‐dimensional (3D) Stokes flow and a two‐dimensional (2D) fourth‐order Euler–Bernoulli or Kirchhoff plate. The interaction of these parabolic and hyperbolic partial differential equations (PDE) occurs at the boundary interface which is assumed to be fixed. The vertical displacement of the plate dynamics evolves on the flat portion of the boundary where the coupling conditions are implemented via the matching velocities of the plate and fluid flow, as well as the Dirichlet boundary trace of the pressure. This pressure term also acts as a coupling agent, since it appears as a forcing term on the flat, elastic plate domain. Our main focus in this work is to generate some numerical results concerning the approximate solutions to the FSI model. For this, we propose a numerical algorithm that sequentially solves the fluid and plate subsystems through an effective decoupling approach. Numerical results of test problems are presented to illustrate the performance of the proposed method. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email