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Abstract Incorporating microbial processes into soil biogeochemical models has received growing interest. However, determining the parameters that govern microbially driven biogeochemical processes typically requires case‐specific model calibration in various soil and ecosystem types. Here each case refers to an independent and individual experimental unit subjected to repeated measurements. Using the Microbial‐ENzyme Decomposition model, this study aimed to test whether a common set of microbially‐relevant parameters (i.e., generalized parameters) could be obtained across multiple cases based on a two‐year incubation experiment in which soil samples of four distinct soil series (i.e., Coland, Kesswick, Westmoreland, and Etowah) collected from forest and grassland were subjected to cellulose or no cellulose amendment. Results showed that a common set of parameters controlling microbial growth and maintenance as well as extracellular enzyme production and turnover could be generalized at the soil series level but not land cover type. This indicates that microbial model developments need to prioritize soil series type over plant functional types when implemented across various sites. This study also suggests that, in addition to heterotrophic respiration and microbial biomass data, extracellular enzyme data sets are needed to achieve reliable microbial‐relevant parameters for large‐scale soil model projections.
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A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Abstract. Photosynthesis plays an important role in carbon,nitrogen, and water cycles. Ecosystem models for photosynthesis arecharacterized by many parameters that are obtained from limited in situmeasurements and applied to the same plant types. Previous site-by-sitecalibration approaches could not leverage big data and faced issues likeoverfitting or parameter non-uniqueness. Here we developed an end-to-endprogrammatically differentiable (meaning gradients of outputs to variablesused in the model can be obtained efficiently and accurately) version of thephotosynthesis process representation within the Functionally AssembledTerrestrial Ecosystem Simulator (FATES) model. As a genre ofphysics-informed machine learning (ML), differentiable models couplephysics-based formulations to neural networks (NNs) that learn parameterizations(and potentially processes) from observations, here photosynthesis rates. Wefirst demonstrated that the framework was able to correctly recover multiple assumedparameter values concurrently using synthetic training data. Then, using areal-world dataset consisting of many different plant functional types (PFTs), welearned parameters that performed substantially better and greatly reducedbiases compared to literature values. Further, the framework allowed us togain insights at a large scale. Our results showed that the carboxylationrate at 25 ∘C (Vc,max25) was more impactful than a factorrepresenting water limitation, although tuning both was helpful inaddressing biases with the default values. This framework could potentiallyenable substantial improvement in our capability to learn parameters andreduce biases for ecosystem modeling at large scales.
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- Award ID(s):
- 2103942
- PAR ID:
- 10527055
- Publisher / Repository:
- European Geophysical Union
- Date Published:
- Journal Name:
- Biogeosciences
- Volume:
- 20
- Issue:
- 13
- ISSN:
- 1726-4189
- Page Range / eLocation ID:
- 2671 to 2692
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.5194/bg-20-2671-2023
