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Synopsis Acquiring accurate 3D biological models efficiently and economically is important for morphological data collection and analysis in organismal biology. In recent years, structure-from-motion (SFM) photogrammetry has become increasingly popular in biological research due to its flexibility and being relatively low cost. SFM photogrammetry registers 2D images for reconstructing camera positions as the basis for 3D modeling and texturing. However, most studies of organismal biology still relied on commercial software to reconstruct the 3D model from photographs, which impeded the adoption of this workflow in our field due the blocking issues such as cost and affordability. Also, prior investigations in photogrammetry did not sufficiently assess the geometric accuracy of the models reconstructed. Consequently, this study has two goals. First, we presented an affordable and highly flexible SFM photogrammetry pipeline based on the open-source package OpenDroneMap (ODM) and its user interface WebODM. Second, we assessed the geometric accuracy of the photogrammetric models acquired from the ODM pipeline by comparing them to the models acquired via microCT scanning, the de facto method to image skeleton. Our sample comprised 15 Aplodontia rufa (mountain beaver) skulls. Using models derived from microCT scans of the samples as reference, our results showed that the geometry of the models derived from ODM was sufficiently accurate for gross metric and morphometric analysis as the measurement errors are usually around or below 2%, and morphometric analysis captured consistent patterns of shape variations in both modalities. However, subtle but distinct differences between the photogrammetric and microCT-derived 3D models could affect the landmark placement, which in return affected the downstream shape analysis, especially when the variance within a sample is relatively small. At the minimum, we strongly advise not combining 3D models derived from these two modalities for geometric morphometric analysis. Our findings can be indictive of similar issues in other SFM photogrammetry tools since the underlying pipelines are similar. We recommend that users run a pilot test of geometric accuracy before using photogrammetric models for morphometric analysis. For the research community, we provide detailed guidance on using our pipeline for building 3D models from photographs.
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Remote, Rugged Field Scenarios for Archaeology and the Field Sciences: Object Avoidance and 3D Flight Planning with sUAS Photogrammetry
Advances built into recent sUASs (drones) offer a compelling possibility for field-based data collection in logistically challenging and GPS-denied environments. sUASs-based photogrammetry generates 3D models of features and landscapes, used extensively in archaeology as well as other field sciences. Until recently, navigation has been limited by the expertise of the pilot, as objects, like trees, and vertical or complex environments, such as cliffs, create significant risks to successful documentation. This article assesses sUASs’ capability for autonomous obstacle avoidance and 3D flight planning using data collection scenarios carried out in Black Mesa, Oklahoma. Imagery processed using commercial software confirmed that the collected data can build photogrammetric models suitable for general archaeological documentation. The results demonstrate that new capabilities in drones may open up new field environments previously considered inaccessible, too risky, or costly for fieldwork, especially for all but the most expert pilots. Emerging technologies for drone-based photogrammetry, such as the Skydio 2+ considered here, place remote, rugged terrain within reach of many archaeological research units in terms of commercial options and cost.
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- Award ID(s):
- 2114235
- PAR ID:
- 10527625
- Publisher / Repository:
- MDPI
- Date Published:
- Journal Name:
- Remote Sensing
- Volume:
- 16
- Issue:
- 8
- ISSN:
- 2072-4292
- Page Range / eLocation ID:
- 1418
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.3390/rs16081418
