Raw data of scanning electron microscopy (SEM), atomic force microscopy (AFM), force spectroscopy, data analysis and plotting, optical microscopy, and finite element simulations (FEA) for our manuscript. File Formats AFM raw data is provided in Gwyddion format, which can be viewed using the Gwyddion AFM viewer, which has been released under the GNU public software licence GPLv3 and can be downloaded free of charge at http://gwyddion.net/ Optical microscopy data is provided in JPEG format SEM raw data is provided in TIFF format Data analysis codes were written in MATLAB (https://www.mathworks.com/products/matlab) and stored as *.m files Imported raw data to MATLAB and saved MATLAB data were stored as MATLAB multidimensional arrays (MATLAB “struct” data format, *.mat files) FEA results were saved as text files, .txt files) Data (Folder Structure) The data in the dataverse is best viewed in Tree mode. Read me file.docx More Explanations of analysis in docx format. Figure 1 Figure 1 - panel b.jpg (5.5 MB) Optical micrograph (JPEG format) Figure 1 - panel c - AFM Raw Data.gwy (8.0 MB) AFM raw data (Gwyddion format) Figure 1 - panel e - P0_Force-curve_raw_data.txt (3 KB) Raw force-displacement data at P0 (text format) Figure 1 - panel e - Px_Force-curve_raw_data.txt (3 KB) Raw force-displacement data at Px (text format) Figure 1 - panel e - Py_Force-curve_raw_data.txt (3 KB) Raw force-displacement data at Py (text format) Figure 1 - panel e - P0_simulation_raw_data.txt (12 KB) FEA simulated force-distance data at P0 (text format) Figure 1 - panel e - Px_simulation_raw_data.txt (12 KB) FEA simulated force-distance data at Px (text format) Figure 1 - panel e - Py_simulation_raw_data.txt (12 KB) FEA simulated force-distance data at Py (text format) Figure 1 - panel e - FCfindc.m (2 KB) MATLAB code to calculate inverse optical lever sensitivity (InverseOLS) of AFM cantelever (matlab .m format) Figure 1 - panel e - FreqFindANoise_new.m (2 KB) MATLAB code to calculate white noise constant, A (Explained in the Read me file) (matlab .m format) Figure 1 - panel e - FreqFindQ_new.m (4 KB) MATLAB code to calculate Q factor of the AFM cantelever (matlab .m format) Figure 1 - panel e - FCkeff.m (2 KB) MATLAB code to calculate the effective spring constant k of the AFM cantelever (matlab .m format) Figure 1 - panel e - FCimport.m (7 KB) MATLAB code to import raw force-displacement data into MATLAB (matlab .m format) Figure 1 - panel e - FCForceDist.m (2 KB) MATLAB code to convert raw force-displacement data into force-distance data (matlab .m format) Figure 1 - panel e - Figure 1- Panel e - data.mat (6 KB) MATALB struct data file for calibrated force-distance data at all indentation points (matlab .mat format) Figure 1 - panel e - Panel_e_MatlabCode.m (6 KB) MATALB code for plotting experimental and simulated force curves in panel e (matlab .m format) Figure 1 - panel e - Read me file - force curve calibration.docx (14 KB) Explains force curve calibration (.docx format) Figure 1 - panel e - Read me file - lever spring constant calibration.docx (14 KB) Explains AFM lever spring constant calibration (.docx format) Figure 2 Figure 2 - panel a - MATLAB data.mat (2.6 KB) MATALB data file for simulated data (matlab .mat format) Figure 2 - panel b - MATLAB data.mat (2.4 KB) MATALB data file for simulated data (matlab .mat format) Figure 2 - panel a - simulation raw data.txt (5.0 KB) Raw simulation data: xyz coordinates of the nodes of deformed FEA mesh (text format) Figure 2 - panel b - simulation raw data.txt (5.0 KB) Raw simulation data: xyz coordinates of the nodes of deformed FEA mesh (text format) Figure 2 - panel ab - MATLABcode.m (1.0 KB) MATALB code for plotting panel a b figures (matlab .m format) Figure 2 - panel c - Degree of Anisotropy datacode.m (1.0 KB) MATALB code for plotting panel c graph (matlab .m format) Figure 3 Figure 3 - panel a - App_curve_1_raw_data.txt (35 KB) Raw force-displacement data approach curve 1 (text format) Figure 3 - panel a - App_curve_2_raw_data.txt (34 KB) Raw force-displacement data approach curve 2 (text format) Figure 3 - panel a - App_curve_3_raw_data.txt (34 KB) Raw force-displacement data approach curve 3 (text format) Figure 3 - panel a - App_curve_4_raw_data.txt (34 KB) Raw force-displacement data approach curve 4 (text format) Figure 3 - panel a - Ret_curve_1_raw_data.txt (35 KB) Raw force-displacement data of retract curve 1 (text format) Figure 3 - panel a - Ret_curve_2_raw_data.txt (35 KB) Raw force-displacement data of retract curve 2 (text format) Figure 3 - panel a - Ret_curve_3_raw_data.txt (35 KB) Raw force-displacement data of retract curve 3 (text format) Figure 3 - panel a - Simulation_raw_data-part 1.txt (43 KB) simulated force-displacement data of -part 1 (text format) Figure 3 - panel a - Simulation_raw_data-part 2.txt (43 KB) simulated force-displacement data of -part 2 (text format) Figure 3 - panel a - FCfindc.m (2 KB) MATLAB code to calculate inverse optical lever sensitivity (InverseOLS) of AFM cantelever (matlab .m format) Figure 3 - panel a - FreqFindANoise_new.m (2 KB) MATLAB code to calculate white noise constant, A (Explained in the Read me file) (matlab .m format) Figure 3 - panel a - FreqFindQ_new.m (4 KB) MATLAB code to calculate Q factor of the AFM cantelever (matlab .m format) Figure 3 - panel a - FCkeff.m (2 KB) MATLAB code to calculate the effective spring constant k of the AFM cantelever (matlab .m format) Figure 3 - panel a - FCimport.m (7 KB) MATLAB code to import raw force-displacement data into MATLAB (matlab .m format) Figure 3 - panel a - FCForceDist.m (2 KB) MATLAB code to convert raw force-displacement data into force-distance data (matlab .m format) Figure 1 - panel e - Read me file - force curve calibration.docx (14 KB) Explains force curve calibration (.docx format) Figure 1 - panel e - Read me file - lever spring constant calibration.docx (14 KB) Explains AFM lever spring constant calibration (.docx format) Figure 3 - panel b - SEM Raw Data.tiff (9 KB) SEM raw image of broken silk membrane due to extreme indentation (.tiff format)
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Replication Data for: Long-Range Attraction between Graphene and Water/Oil Interfaces
Atomic force microscopy (AFM) image raw data, force spectroscopy raw data, data analysis/data plotting, and force modeling. File Formats The raw files of the AFM imaging scans of the colloidal probe surface are provided in NT-MDTs proprietary .mdt file format, which can be opened using the Gwyddion software package. Gwyddion has been released under the GNU public software license GPLv3 and can be downloaded free of charge at http://gwyddion.net/. The processed image files are included in Gwyddions .gwy file format. Force spectroscopy raw files are also provided in .mdt file format, which can be opened using NT-MDTs NOVA Px software (we used 3.2.5 rev. 10881). All the force data were converted to ASCII files (*.txt) using the NOVA Px software to also provide them in human readable form with this data set. The MATLAB codes used for force curve processing and data analysis are given as *.m files and can be opened by MATLAB (https://www.mathworks.com/products/matlab) or by a text editor. The raw and processed force curve data and other values used for data processing are stored in binary form in *.mat MATLAB data files, which can be opened by MATLAB. Organized by figure, all the raw and processed force curve data are given in Excel worksheets (*.xlsx), one per probe/substrate combination. Data (Folder Structure) The data in the dataverse is best viewed in Tree mode. Codes for Force Curve Processing The three MATLAB codes used for force curve processing are contained in this folder. The text file Read me.txt provides all the instructions to process raw force data using these three MATLAB codes. Figure 3B, 3C – AFM images The raw (.mdt) and processed (.gwy) AFM images of the colloidal probe before and after coating with graphene oxide (GO) are contained in this folder. Figure 4 – Force Curve GO The raw data of the force curve shown in Figure 4 and the substrate force curve data (used to find inverse optical lever sensitivity) are given as .mdt files and were exported as ASCII files given in the same folder. The raw and processed force curve data are also given in the variables_GO_Tip 18.mat and GO_Tip 18.xlsx files. The force curve processing codes and instructions can be found in the Codes for Force Curve Processing folder, as mentioned above. Figure 5A – Force–Displacement Curves GO, rGO1, rGO10 All the raw data of the force curves (GO, rGO1, rGO10) shown in Figure 5A and the corresponding substrate force curve data (used to find inverse optical lever sensitivity) are given as .mdt files and were exported as ASCII files given in the same folder. The raw and processed force curve data are also given in *.mat and *.xlsx files. Figure 5B, 5C – Averages of Force and Displacement for Snap-On and Pull-Off Events All the raw data of the force curves (GO, rGO1, rGO10) for all the probes and corresponding substrate force curve data are given as .mdt files and were exported as ASCII files given in this folder. The raw and processed force curve data are also provided in *.mat and *.xlsx files. The snap-on force, snap-on displacement, and pull-off displacement values were obtained from each force curve and averaged as in Code_Figure5B_5C.m. The same code was used for plotting the average values. Figure 6A – Force–Distance Curves GO, rGO1, rGO10 The raw data provided in Figure 5A – Force Displacement Curves GO, rGO1, rGO10 folder were processed into force-vs-distance curves. The raw and processed force curve data are also given in *.mat and *.xlsx files. Figure 6B – Average Snap-On and Pull-Off Distances The same raw data provided in Figure 5B, 5C – Average Snap on Force, Displacement, Pull off Displacement folder were processed into force-vs-distance curves. The raw and processed force curve data of GO, rGO1, rGO10 of all the probes are also given in *.mat and *.xlsx files. The snap-on distance and pull-off distance values were obtained from each force curve and averaged as in Code_Figure6B.m. The code used for plotting is also given in the same text file. Figure 6C – Contact Angles Advancing and receding contact angles were calculated using each processed force-vs-distance curve and averaged according to the reduction time. The obtained values and the code used to plot is given in Code_Figure6C.m. Figure 9A – Force Curve Repetition The raw data of all five force curves and the substrate force curve data are given as .mdt files and were exported as ASCII files given in the same folder. The raw and processed force curve data are also given in *.mat and *.xlsx files. Figure 9B – Repulsive Force Comparison The data of the zoomed-in region of Figure 9A was plotted as Experimental curve. Initial baseline correction was done using the MATLAB code bc.m, and the procedure is given in the Read Me.txt text file. All the raw and processed data are given in rGO10_Tip19_Trial1.xlsx and variables_rGO10_Tip 19.mat files. The MATLAB code used to model other forces and plot all the curves in Figure 9B is given in Exp_vdW_EDL.m.
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- Award ID(s):
- 1905902
- PAR ID:
- 10527929
- Publisher / Repository:
- Harvard Dataverse
- Date Published:
- Edition / Version:
- V1
- Subject(s) / Keyword(s):
- Atomic force microscopy (AFM) image raw data, force spectroscopy raw data, data analysis/data plotting, and force modeling
- Format(s):
- Medium: X
- Location:
- Harvard Dataverse
- Institution:
- William & Mary
- Sponsoring Org:
- National Science Foundation
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