skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Fluid-structure interaction modelling of neighboring tubes with primary cilium analysis
We have developed a numerical model of two osculating cylindrical elastic renal tubules to investigate the impact of neighboring tubules on the stress applied to a primary cilium. We hypothesize that the stress at the base of the primary cilium will depend on the mechanical coupling of the tubules due to local constrained motion of the tubule wall. The objective of this work was to determine the in-plane stresses of a primary cilium attached to the inner wall of one renal tubule subject to the applied pulsatile flow, with a neighboring renal tube filled with stagnant fluid in close proximity to the primary tubule. We used the commercial software COMSOL to model the fluid-structure interaction of the applied flow and tubule wall, and we applied a boundary load to the face of the primary cilium during this simulation to produces a stress at its base. We confirm our hypothesis by observing that on average the in-plane stresses are greater at the base of the cilium when there is a neighboring renal tube versus if there is no neighboring tube at all. In combination with the hypothesized function of a cilium as a biological fluid flow sensor, these results indicate that flow signaling may also depend on how the tubule wall is constrained by neighboring tubules. Our results may be limited in their interpretation due to the simplified nature of our model geometry, and further improvements to the model may potentially lead to the design of future experiments.  more » « less
Award ID(s):
1951568
PAR ID:
10536872
Author(s) / Creator(s):
; ;
Publisher / Repository:
AIMS press
Date Published:
Journal Name:
Mathematical Biosciences and Engineering
Volume:
20
Issue:
2
ISSN:
1551-0018
Page Range / eLocation ID:
3677 to 3699
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract A primary cilium, made of nine microtubule doublets enclosed in a cilium membrane, is a mechanosensing organelle that bends under an external mechanical load and sends an intracellular signal through transmembrane proteins activated by cilium bending. The nine microtubule doublets are the main load‐bearing structural component, while the transmembrane proteins on the cilium membrane are the main sensing component. No distinction was made between these two components in all existing models, where the stress calculated from the structural component (nine microtubule doublets) was used to explain the sensing location, which may be totally misleading. For the first time, we developed a microstructure‐based primary cilium model by considering these two components separately. First, we refined the analytical solution of bending an orthotropic cylindrical shell for individual microtubule, and obtained excellent agreement between finite element simulations and the theoretical predictions of a microtubule bending as a validation of the structural component in the model. Second, by integrating the cilium membrane with nine microtubule doublets and simulating the tip‐anchored optical tweezer experiment on our computational model, we found that the microtubule doublets may twist significantly as the whole cilium bends. Third, besides being cilium‐length‐dependent, we found the mechanical properties of the cilium are also highly deformation‐dependent. More important, we found that the cilium membrane near the base is not under pure in‐plane tension or compression as previously thought, but has significant local bending stress. This challenges the traditional model of cilium mechanosensing, indicating that transmembrane proteins may be activated more by membrane curvature than membrane stretching. Finally, we incorporated imaging data of primary cilia into our microstructure‐based cilium model, and found that comparing to the ideal model with uniform microtubule length, the imaging‐informed model shows the nine microtubule doublets interact more evenly with the cilium membrane, and their contact locations can cause even higher bending curvature in the cilium membrane than near the base. 
    more » « less
  2. Self-assembled lipid tubules are unique supramolecular structures in cell functions. Lipid tubules that are engineered in vitro are of great interest for technological applications ranging from the templated synthesis of nanomaterials to drug delivery. Herein, we report a study to create long lipid tubules from a mono-unsaturated lipid, 1-stearoyl-2-oleoyl- sn-glycero -3-phosphocholine (SOPC), due to the effect of calcium ions. We found that calcium ions at mM concentrations promote the self-assembly of SOPC lipids into inter-connected hollow lipid tubes that are μm thick and as long as a few millimeters. Higher calcium concentration leads to an increase in the numbers of lipid tubules formed, but has little effect on tubule diameter. Calcium ions also stabilize lipid tubules, which break up upon the removal of ions. We showed that the lipid tubule-promoting effect is general for divalent ions. We were able to vary the morphology of lipid tubules from thin tube to “strings of pearls” structures or increase the tubule thickness by mixing SOPC with other lipids of different spontaneous curvature effects. Our results reveal that the divalent charges of calcium ions and the asymmetric mono-unsaturated structure of SOPC acyl chains act in combination to cause the formation of lipid tubules. 
    more » « less
  3. The equine hoof wall has a unique hierarchical structure that allows it to survive high‐impact scenarios. Previous authors have explored the compressive, viscoelastic, and fracture control properties of the hoof wall and suggested that this complex structure plays a vital role in the hoof's behavior. However, the link between the structure and the behavior of the hoof wall has been made primarily with the use of post‐fracture analysis. Here, periodic microcomputed tomography scans are used to observe the temporal behavior of the hoof's meso and microstructures during compression, fracture, and relaxation. These results shed light on the structural anisotropy of the hoof wall and how its hollow tubules behave when compressed in different directions, at different hydration levels, and in various locations within the hoof wall. The behavior of tubule bridges during compression is also reported for the first time. This study elucidates several fracture phenomena, including the way cracks are deflected at tubule interfaces and tubule bridging, tubule arresting, and fiber bridging. Finally, relaxation tests are used to show how the tubule cavities can regain their shape after compression. 
    more » « less
  4. Carotid artery diseases, such as atherosclerosis, are a major cause of death in the United States. Wall shear stresses are known to prompt plaque formation, but there is limited understanding of the complex flow structures underlying these stresses and how they differ in a pre-disposed high-risk patient cohort. A ‘healthy’ and a novel ‘pre-disposed’ carotid artery bifurcation model was determined based on patient-averaged clinical data, where the ‘pre-disposed’ model represents a pathological anatomy. Computational fluid dynamic simulations were performed using a physiological flow based on healthy human subjects. A main hairpin vortical structure in the internal carotid artery sinus was observed, which locally increased instantaneous wall shear stress. In the pre-disposed geometry, this vortical structure starts at an earlier instance in the cardiac flow cycle and persists over a much shorter period, where the second half of the cardiac cycle is dominated by perturbed secondary flow structures and vortices. This coincides with weaker favorable axial pressure gradient peaks over the sinus for the ‘pre-disposed’ geometry. The findings reveal a strong correlation between vortical structures and wall shear stress and imply that an intact internal carotid artery sinus hairpin vortical structure has a physiologically beneficial role by increasing local wall shear stresses. The deterioration of this beneficial vortical structure is expected to play a significant role in atherosclerotic plaque formation. 
    more » « less
  5. An osteocyte is a bone cell situated inside a hard bone matrix in an interstice (lacuna). It has many dendritic structures called cellular processes that radiate outward from the cell through the bone matrix via cylindrical openings (canaliculi). Osteocytes can sense stress and strain applied by the interstitial fluid flow and respond by releasing biochemical signals that regulate bone remodeling. In vitro experiments have suggested that the stress and strain typically experienced at the macroscale tissue level have to be amplified 10× in order for osteocytes to have a significant response in vivo. This stress and strain amplification mechanism is not yet well understood. Previous studies suggest that the processes are the primary sites for mechanosensation thanks to the tethering elements that attach the process membrane to the canalicular wall. However, there are other potential factors which may also contribute to stress and strain amplification, such as canalicular wall geometry and osteocyte-associated proteins in the interstitial space called pericellular matrix. In this work, we perform computational studies to study how canalicular wall roughness affects stress and strain amplification. Our major finding is that the wall roughness induces significantly greater wall shear stress (WSS) on the process when the wall roughness increases flow resistance; and the roughness has relatively smaller influence on the WSS when the resistance remains the same. 
    more » « less