More Like this

1. Environmental and spatial drivers of taxonomic, functional, and phylogenetic characteristics of bat communities in human-modified landscapes

   https://doi.org/10.7717/peerj.2551  

   Cisneros, Laura M. ; Fagan, Matthew E. ; Willig, Michael R. ( October 2016 , PeerJ)

   Assembly of species into communities following human disturbance (e.g., deforestation, fragmentation) may be governed by spatial (e.g., dispersal) or environmental (e.g., niche partitioning) mechanisms. Variation partitioning has been used to broadly disentangle spatial and environmental mechanisms, and approaches utilizing functional and phylogenetic characteristics of communities have been implemented to determine the relative importance of particular environmental (or niche-based) mechanisms. Nonetheless, few studies have integrated these quantitative approaches to comprehensively assess the relative importance of particular structuring processes.

   We employed a novel variation partitioning approach to evaluate the relative importance of particular spatial and environmental drivers of taxonomic, functional, and phylogenetic aspects of bat communities in a human-modified landscape in Costa Rica. Specifically, we estimated the amount of variation in species composition (taxonomic structure) and in two aspects of functional and phylogenetic structure (i.e., composition and dispersion) along a forest loss and fragmentation gradient that are uniquely explained by landscape characteristics (i.e., environment) or space to assess the importance of competing mechanisms.

   The unique effects of space on taxonomic, functional and phylogenetic structure were consistently small. In contrast, landscape characteristics (i.e., environment) played an appreciable role in structuring bat communities. Spatially-structured landscape characteristics explained 84% of the variation in functional or phylogenetic dispersion, and the unique effects of landscape characteristics significantly explained 14% of the variation in species composition. Furthermore, variation in bat community structure was primarily due to differences in dispersion of species within functional or phylogenetic space along the gradient, rather than due to differences in functional or phylogenetic composition.

   Variation among bat communities was related to environmental mechanisms, especially niche-based (i.e., environmental) processes, rather than spatial mechanisms. High variation in functional or phylogenetic dispersion, as opposed to functional or phylogenetic composition, suggests that loss or gain of niche space is driving the progressive loss or gain of species with particular traits from communities along the human-modified gradient. Thus, environmental characteristics associated with landscape structure influence functional or phylogenetic aspects of bat communities by effectively altering the ways in which species partition niche space.

    

   more » « less
2. Comparison of germline mutations in African American and Caucasian men with metastatic prostate cancer

   https://doi.org/10.1002/pros.24123  

   Ledet, Elisa M. ; Burgess, Earle F. ; Sokolova, Alexandra O. ; Jaeger, Ellen B. ; Hatton, Whitley ; Moses, Marcus ; Miller, Patrick ; Cotogno, Patrick ; Layton, Jodi ; Barata, Pedro ; et al ( April 2021 , The Prostate)

   The goal of this study is to evaluate germline genetic variants in African American men with metastatic prostate cancer as compared to those in Caucasian men with metastatic prostate cancer in an effort to understand the role of genetic factors in these populations.

   African American and Caucasian men with metastatic prostate cancer who had germline testing using multigene panels were used to generate comparisons. Germline genetic results, clinical parameters, and family histories between the two populations were analyzed.

   A total of 867 patients were included in this retrospective study, including 188 African American and 669 Caucasian patients. There was no significant difference in the likelihood of a pathogenic or likely‐pathogenic variants (PV/LPVs) between African American and Caucasian patients (p = .09). African American patients were more likely to have a variant of unknown significance than Caucasians (odds ratio [OR] = 1.95;p < .0001). BRCA1 PV/LPVs were higher in African Americans (OR = 4.86;p = .04). African American patients were less likely to have a PV/LPV in non‐BRCA DNA repair genes (OR = 0.30;p = .008). Family history of breast (OR = 2.09;p = .002) or ovarian cancer (OR = 2.33;p = .04) predicted PV/LPVs in Caucasians but not African‐Americans. This underscores the limitations of family history in AA men and the importance of personal history to guide germline testing in AA men.

   In metastatic prostate cancer patients, PV/LPVs of tested genes did not vary by race, BRCA1 PV/LPVs were more common in the African American subset. However, PV/LPVs in non‐BRCA DNA repair genes were less likely to be encountered in African Americans. Family history associated with genetic testing results in Caucasians only.

    

   more » « less
3. Estimating animal size or distance in camera trap images: Photogrammetry using the pinhole camera model

   https://doi.org/10.1111/2041-210X.13880  

   Leorna, Scott ; Brinkman, Todd ; Fullman, Timothy ( May 2022 , Methods in Ecology and Evolution)

   As camera trapping has become a standard practice in wildlife ecology, developing techniques to extract additional information from images will increase the utility of generated data. Despite rapid advancements in camera trapping practices, methods for estimating animal size or distance from the camera using captured images have not been standardized. Deriving animal sizes directly from images creates opportunities to collect wildlife metrics such as growth rates or changes in body condition. Distances to animals may be used to quantify important aspects of sampling design such as the effective area sampled or distribution of animals in the camera's field‐of‐view.

   We present a method of using pixel measurements in an image to estimate animal size or distance from the camera using a conceptual model in photogrammetry known as the ‘pinhole camera model’. We evaluated the performance of this approach both using stationary three‐dimensional animal targets and in a field setting using live captive reindeerRangifer tarandusranging in size and distance from the camera.

   We found total mean relative error of estimated animal sizes or distances from the cameras in our simulation was −3.0% and 3.3% and in our field setting was −8.6% and 10.5%, respectively. In our simulation, mean relative error of size or distance estimates were not statistically different between image settings within camera models, between camera models or between the measured dimension used in calculations.

   We provide recommendations for applying the pinhole camera model in a wildlife camera trapping context. Our approach of using the pinhole camera model to estimate animal size or distance from the camera produced robust estimates using a single image while remaining easy to implement and generalizable to different camera trap models and installations, thus enhancing its utility for a variety of camera trap applications and expanding opportunities to use camera trap images in novel ways.

    

   more » « less
4. Activator-free single-component Co( i )-catalysts for regio- and enantioselective heterodimerization and hydroacylation reactions of 1,3-dienes. New reduction procedures for synthesis of [L]Co( i )-complexes and comparison to in situ generated catalysts

   https://doi.org/10.1039/d2dt01484j  

   Parsutkar, Mahesh M. ; Moore, Curtis E. ; RajanBabu, T. V. ( June 2022 , Dalton Transactions)

   Warren Piers (Ed.)

   Although cobalt( i ) bis-phosphine complexes have been implicated in many selective C–C bond-forming reactions, until recently relatively few of these compounds have been fully characterized or have been shown to be intermediates in catalytic reactions. In this paper we present a new practical method for the synthesis and isolation of several cobalt( i )-bis-phosphine complexes and their use in Co( i )-catalyzed reactions. We find that easily prepared ( in situ generated or isolated) bis-phosphine and (2,6- N -aryliminoethyl)pyridine (PDI) cobalt( ii ) halide complexes are readily reduced by 1,4-bis-trimethylsilyl-1,4-dihydropyrazine or commercially available lithium nitride (Li 3 N), leaving behind only innocuous volatile byproducts. Depending on the structures of the bis-phosphines, the cobalt( i ) complex crystallizes as a phosphine-bridged species [(P∼P)(X)Co I [μ-(P∼P)]Co I (X)(P∼P)] or a halide-bridged species [(P∼P)Co I [μ-(X)] 2 Co I (P∼P)]. Because the side-products are innocuous, these methods can be used for the in situ generation of catalytically competent Co( i ) complexes for a variety of low-valent cobalt-catalyzed reactions of even sensitive substrates. These complexes are also useful for the synthesis of rare cationic [(P∼P)Co I -η 4 -diene] + X − or [(P∼P)Co I -η 6 -arene] + X − complexes, which are shown to be excellent single-component catalysts for the following regioselective reactions of dienes: heterodimerizations with ethylene or methyl acrylate, hydroacylation and hydroboration. The reactivity of the single-component catalysts with the in situ generated species are also documented. 

   more » « less
5. Sensitivity of dryland plant allometry to climate

   https://doi.org/10.1111/1365-2435.13463  

   Rudgers, Jennifer A. ; Hallmark, Alesia ; Baker, Stephanie R. ; Baur, Lauren ; Hall, Kristofer M. ; Litvak, Marcy E. ; Muldavin, Esteban H. ; Pockman, William T. ; Whitney, Kenneth D. ; Sala, ed., Anna ( October 2019 , Functional Ecology)

   Patterns of plant biomass partitioning are fundamental to estimates of primary productivity and ecosystem process rates. Allometric relationships between above‐ground plant biomass and non‐destructive measures of plant size, such as cover, volume or stem density are widely used in plant ecology. Such size‐biomass allometry is often assumed to be invariant for a given plant species, plant functional group or ecosystem type.

   Allometric adjustment may be an important component of the short‐ or long‐term response of plants to abiotic conditions. We used 18 years of size‐biomass data describing of 85 plant species to investigate the sensitivity of allometry to precipitation, temperature or drought across two seasons and four ecosystems in central New Mexico, USA.

   Size‐biomass allometry varied with climate in 65%–70% of plant species. Closely related plant species had similar sensitivities of allometry to natural spatiotemporal variation in precipitation, temperature or drought. Annuals were less sensitive than perennials, and forbs were less sensitive than grasses or shrubs. However, the differences associated with plant life history or functional group were not independent of plant evolutionary history, as supported by the application of phylogenetically independent contrasts.

   Our results demonstrate that many plant species adjust patterns in the partitioning of above‐ground biomass under different climates and highlight the importance of long‐term data for understanding functional differences among plant species.

   A freePlain Language Summarycan be found within the Supporting Information of this article.

    

   more » « less